Non-Coding RNA Search

rcmu27_n13.y1

Sequence:


               
               GAGCCAGCTCAGTAATCTGCCTTTGAGTTTGAAAGGTGTCAGAAGCACCCTTGCTCGGCT
CCTCCCCCCGAGATGTGGCACCTGGCCCCTTTCCCCCGAGGTACCCCTCTGCCATCTCTT
TCTTCCGACAGGCAGAGAGGTCTCTCTATCCGCCACCCCCGCACCCCGTTCGGCCCTATG
ACCGGGGCCATTTCATCCTCTCATCCCTTCCTCCTGGGCTGCAGTGTTATTTATTTTTAA
TGCCTTTGATTCATTTCCCTCTTGTTTTGACCAAGCAAACAGCACACATCTGCTGCCACC
AGGAGGTGTCAATAGTTCATACTGTTCAATTTGTATGCCCCAAACCCACTGTAGGGCCGA
TTCTGCCTTTTGCCTCTATCTCAAGTTTCAATTTCAAAGTATTATGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCAGCTCAGTAATCTGCCTTTGAGTTTGAAAGGTGTCAGAAGCACCCTTGCTCGGCT
CCTCCCCCCGAGATGTGGCACCTGGCCCCTTTCCCCCGAGGTACCCCTCTGCCATCTCTT
TCTTCCGACAGGCAGAGAGGTCTCTCTATCCGCCACCCCCGCACCCCGTTCGGCCCTATG
ACCGGGGCCATTTCATCCTCTCATCCCTTCCTCCTGGGCTGCAGTGTTATTTATTTTTAA
TGCCTTTGATTCATTTCCCTCTTGTTTTGACCAAGCAAACAGCACACATCTGCTGCCACC
AGGAGGTGTCAATAGTTCATACTGTTCAATTTGTATGCCCCAAACCCACTGTAGGGCCGA
TTCTGCCTTTTGCCTCTATCTCAAGTTTCAATTTCAAAGTATTATGCTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               84-320, - strand, RNAz p=0.999929

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-320, - strand, RNAz p=0.999929

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               67-133, - strand, RNAmicro p=0.957516

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               67-133, - strand, RNAmicro p=0.957516

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-410, gnl|bosTau2|chr18 (24463332-24462945)
               

               
               8-410, gnl|Hg17|chr16 (53408844-53409222)
               

               
               8-410, gnl|Mm7|chr8 (90865373-90865733)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-410, gnl|bosTau2|chr18 (24463332-24462945)
               

               
               8-410, gnl|Hg17|chr16 (53408844-53409222)
               

               
               8-410, gnl|Mm7|chr8 (90865373-90865733)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	8-410, gnl\|bosTau2\|chr18 (24463332-24462945)
	8-410, gnl\|Hg17\|chr16 (53408844-53409222)
	8-410, gnl\|Mm7\|chr8 (90865373-90865733)