Non-Coding RNA Search

rcmu28_a17.y1

Sequence:


               
               GGATGGATTCAAatttatccatacattaagttgatggacatttgagtttccactcttttg
actattaaaataattatactattaagttttttgtgcacattttttgtggccacatgtttt
catttctcttgggtatatatttggcaatgaaattgctgggtcatatgataactctatatc
taacctttcgagaaactacaaaactgtttCCAATTTTCCATTTCCATAAGCAATGTGTAT
GAGAATTCCAACTCCACATTGTTTTCAATGTTTGCTATTGTCTTTAAAAAATTttttagc
cattctggtgaatatgaagtatcttaatgtagttctgatttgcatgtccttaattattga
tgatgttaagcatttctcatgtgcttaaggaacatttgcatattttctttggagaaatgt
ctatttgcatcctttacccatttCTAAGTTGAATTTTCATATTTTTTGCTTGTTTGTTTT
TGTCTTTTTAGGGCCCTACCTGTGGCATATGGACGTTCCAAGGCTAGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGGATTCAAatttatccatacattaagttgatggacatttgagtttccactcttttg
actattaaaataattatactattaagttttttgtgcacattttttgtggccacatgtttt
catttctcttgggtatatatttggcaatgaaattgctgggtcatatgataactctatatc
taacctttcgagaaactacaaaactgtttCCAATTTTCCATTTCCATAAGCAATGTGTAT
GAGAATTCCAACTCCACATTGTTTTCAATGTTTGCTATTGTCTTTAAAAAATTttttagc
cattctggtgaatatgaagtatcttaatgtagttctgatttgcatgtccttaattattga
tgatgttaagcatttctcatgtgcttaaggaacatttgcatattttctttggagaaatgt
ctatttgcatcctttacccatttCTAAGTTGAATTTTCATATTTTTTGCTTGTTTGTTTT
TGTCTTTTTAGGGCCCTACCTGTGGCATATGGACGTTCCAAGGCTAGGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               199-304, - strand, RNAz p=0.971251

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-304, - strand, RNAz p=0.971251

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-467, gnl|bosTau2|chr16 (41764090-41763625)
               

               
               4-467, gnl|hg17|chr1 (170324115-170324758)
               

               
               4-467, gnl|Hg17|chr1 (170324552-170324114)
               

               
               4-467, gnl|panTro1|chr1 (152694104-152694746)
               

               
               4-467, gnl|rheMac2|chr1 (203269154-203269825)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-467, gnl|bosTau2|chr16 (41764090-41763625)
               

               
               4-467, gnl|hg17|chr1 (170324115-170324758)
               

               
               4-467, gnl|Hg17|chr1 (170324552-170324114)
               

               
               4-467, gnl|panTro1|chr1 (152694104-152694746)
               

               
               4-467, gnl|rheMac2|chr1 (203269154-203269825)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	4-467, gnl\|bosTau2\|chr16 (41764090-41763625)
	4-467, gnl\|hg17\|chr1 (170324115-170324758)
	4-467, gnl\|Hg17\|chr1 (170324552-170324114)
	4-467, gnl\|panTro1\|chr1 (152694104-152694746)
	4-467, gnl\|rheMac2\|chr1 (203269154-203269825)