Non-Coding RNA Search

rcmu30_d6.y1

Sequence:


               
               TGTTTAGTGCTGATCCAACAAGAGACAGCAAACGAGTGGAGCAACTTATTCGAGAAAAAG
TCCATTTGCATCAAAAATTAAAAGGTTTAGAGACTGAAGTAGCAGAATTAAGAGCTGAAA
AAGAGAATTCTGGTGCTCAGGTAGAAAGTGTCCAAAGAATTCAGGTGCGGCAGTTGGCTG
AGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAGTCAGCTAAACTACAGGCTG
AACGCTTGGAGAAAGAACTGCAAGCAAGTAATGAACAAAACACTACTTTAATTAGTAAAC
TGCATAAAACTGAACGGGAAGTAAATACATTGACCAGTAAAGTAAAAGAACTTAAACATT
CAAACAAACTAGAAATAACAGACGTCAAACTGGAGGCAGCAAGAGCTAAGAGTGAGCTAG
AAAGAGAAAGGAATAAAATTCAAAGTGAACTGGATGGATTACAATCAGACAATGAAATTC
TCAAATCAGCCATTGAACACCACAAAATGCTCTTAGTAGAAAAGGATCGTGAATTAATAC
GTAAAGTACAAGCTGCCAAAGAAGAAGGTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTAGTGCTGATCCAACAAGAGACAGCAAACGAGTGGAGCAACTTATTCGAGAAAAAG
TCCATTTGCATCAAAAATTAAAAGGTTTAGAGACTGAAGTAGCAGAATTAAGAGCTGAAA
AAGAGAATTCTGGTGCTCAGGTAGAAAGTGTCCAAAGAATTCAGGTGCGGCAGTTGGCTG
AGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAGTCAGCTAAACTACAGGCTG
AACGCTTGGAGAAAGAACTGCAAGCAAGTAATGAACAAAACACTACTTTAATTAGTAAAC
TGCATAAAACTGAACGGGAAGTAAATACATTGACCAGTAAAGTAAAAGAACTTAAACATT
CAAACAAACTAGAAATAACAGACGTCAAACTGGAGGCAGCAAGAGCTAAGAGTGAGCTAG
AAAGAGAAAGGAATAAAATTCAAAGTGAACTGGATGGATTACAATCAGACAATGAAATTC
TCAAATCAGCCATTGAACACCACAAAATGCTCTTAGTAGAAAAGGATCGTGAATTAATAC
GTAAAGTACAAGCTGCCAAAGAAGAAGGTTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61846014|ref|XP_616277.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61846014|ref|XP_616277.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               6-210, gnl|bosTau2|chr5 (15300948-15300744)
               

               
               6-210, gnl|canFam2|chr15 (37475500-37475729)
               

               
               6-210, gnl|dasNov1|scaffold_38537 (851-622)
               

               
               6-210, gnl|echTel1|scaffold_277422 (11431-11202)
               

               
               6-210, gnl|galGal2|chr1 (41953882-41954111)
               

               
               6-210, gnl|hg17|chr12 (93275026-93275255)
               

               
               6-210, gnl|Hg17|chr12 (93275238-93275034)
               

               
               6-210, gnl|mm7|chr10 (94298745-94298516)
               

               
               6-210, gnl|Mm7|chr10 (94298531-94298735)
               

               
               6-210, gnl|monDom2|scaffold_34 (21749821-21749589)
               

               
               6-210, gnl|oryCun1|scaffold_205555 (34158-33929)
               

               
               6-210, gnl|panTro1|chr10 (95536972-95537201)
               

               
               6-210, gnl|rheMac2|chr11 (95605248-95605477)
               

               
               6-210, gnl|rn3|chr7 (31951113-31950884)
               

               
               6-210, gnl|xenTro1|scaffold_109 (1993696-1993923)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-210, gnl|bosTau2|chr5 (15300948-15300744)
               

               
               6-210, gnl|canFam2|chr15 (37475500-37475729)
               

               
               6-210, gnl|dasNov1|scaffold_38537 (851-622)
               

               
               6-210, gnl|echTel1|scaffold_277422 (11431-11202)
               

               
               6-210, gnl|galGal2|chr1 (41953882-41954111)
               

               
               6-210, gnl|hg17|chr12 (93275026-93275255)
               

               
               6-210, gnl|Hg17|chr12 (93275238-93275034)
               

               
               6-210, gnl|mm7|chr10 (94298745-94298516)
               

               
               6-210, gnl|Mm7|chr10 (94298531-94298735)
               

               
               6-210, gnl|monDom2|scaffold_34 (21749821-21749589)
               

               
               6-210, gnl|oryCun1|scaffold_205555 (34158-33929)
               

               
               6-210, gnl|panTro1|chr10 (95536972-95537201)
               

               
               6-210, gnl|rheMac2|chr11 (95605248-95605477)
               

               
               6-210, gnl|rn3|chr7 (31951113-31950884)
               

               
               6-210, gnl|xenTro1|scaffold_109 (1993696-1993923)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	6-210, gnl\|bosTau2\|chr5 (15300948-15300744)
	6-210, gnl\|canFam2\|chr15 (37475500-37475729)
	6-210, gnl\|dasNov1\|scaffold_38537 (851-622)
	6-210, gnl\|echTel1\|scaffold_277422 (11431-11202)
	6-210, gnl\|galGal2\|chr1 (41953882-41954111)
	6-210, gnl\|hg17\|chr12 (93275026-93275255)
	6-210, gnl\|Hg17\|chr12 (93275238-93275034)
	6-210, gnl\|mm7\|chr10 (94298745-94298516)
	6-210, gnl\|Mm7\|chr10 (94298531-94298735)
	6-210, gnl\|monDom2\|scaffold_34 (21749821-21749589)
	6-210, gnl\|oryCun1\|scaffold_205555 (34158-33929)
	6-210, gnl\|panTro1\|chr10 (95536972-95537201)
	6-210, gnl\|rheMac2\|chr11 (95605248-95605477)
	6-210, gnl\|rn3\|chr7 (31951113-31950884)
	6-210, gnl\|xenTro1\|scaffold_109 (1993696-1993923)