Non-Coding RNA Search

rcol1006b_e18.y1

Sequence:


               
               GCAGATCAGACGATACCCCAGCTTTAAGAGGTTTTTTTACAGGCTCTCAGACTCTTCCCT
CAGAAAGCTGGTAGCCACCCTGCACTGCCAGGAGGCCCACTCCGCTGAGCCTGACAGGAA
CCTTGCCGAGGGATCCTACCCATTTGTCTTCGACTTGGCTAACAAACCTGCTGGCAACAA
TTACCAGGCTGTCCTCAGCCTCGTGGGCCTGCGCTACAGGCAATCCAGCTACGGCCAATT
CCCGTACAGAGAGGCGCAGCCGAACATCACAAGTCCTCAGAGCCAGAGTCCAGACTGAAA
GCTGTGCTTTGCACTCAAGTTCCCTTAAACTATCGGAACATCGGCAGCTTTAGCCAGGAA
ACCCTGAAGATGCTCCATGATGTCCCAGTTCAGTGCCTCACCAACGTAACGGTGTCCACC
AGCATGGGCTTATTGAGATAGCGAATGCACAAGGTGTCTTCCATGAAGCTGGAGGCAGAG
GCCATGGCGGGGAAAGAGCACCGGACTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGATCAGACGATACCCCAGCTTTAAGAGGTTTTTTTACAGGCTCTCAGACTCTTCCCT
CAGAAAGCTGGTAGCCACCCTGCACTGCCAGGAGGCCCACTCCGCTGAGCCTGACAGGAA
CCTTGCCGAGGGATCCTACCCATTTGTCTTCGACTTGGCTAACAAACCTGCTGGCAACAA
TTACCAGGCTGTCCTCAGCCTCGTGGGCCTGCGCTACAGGCAATCCAGCTACGGCCAATT
CCCGTACAGAGAGGCGCAGCCGAACATCACAAGTCCTCAGAGCCAGAGTCCAGACTGAAA
GCTGTGCTTTGCACTCAAGTTCCCTTAAACTATCGGAACATCGGCAGCTTTAGCCAGGAA
ACCCTGAAGATGCTCCATGATGTCCCAGTTCAGTGCCTCACCAACGTAACGGTGTCCACC
AGCATGGGCTTATTGAGATAGCGAATGCACAAGGTGTCTTCCATGAAGCTGGAGGCAGAG
GCCATGGCGGGGAAAGAGCACCGGACTGGG

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               2-260, gnl|bosTau2|chr23 (9489045-9488802)
               

               
               2-260, gnl|canFam2|chr12 (8430314-8430538)
               

               
               2-260, gnl|echTel1|scaffold_323142 (17633-17372)
               

               
               2-260, gnl|hg17|chr6 (36395062-36395311)
               

               
               2-260, gnl|Hg17|chr6 (36395368-36395113)
               

               
               2-260, gnl|loxAfr1|scaffold_40203 (4915-4675)
               

               
               2-260, gnl|mm7|chr17 (27085660-27085888)
               

               
               2-260, gnl|Mm7|chr17 (27085945-27085681)
               

               
               2-260, gnl|oryCun1|scaffold_187478 (12821-12566)
               

               
               2-260, gnl|panTro1|chr5 (36859366-36859615)
               

               
               2-260, gnl|rheMac2|chr4 (36077013-36077262)
               

               
               2-260, gnl|rn3|chr20 (7181595-7181856)
               


               
               262-410, gnl|bosTau2|chr23 (9487065-9486917)
               

               
               262-410, gnl|Hg17|chr6 (36393147-36392999)
               

               
               262-410, gnl|Mm7|chr17 (27085120-27084980)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-260, gnl|bosTau2|chr23 (9489045-9488802)
               

               
               2-260, gnl|canFam2|chr12 (8430314-8430538)
               

               
               2-260, gnl|echTel1|scaffold_323142 (17633-17372)
               

               
               2-260, gnl|hg17|chr6 (36395062-36395311)
               

               
               2-260, gnl|Hg17|chr6 (36395368-36395113)
               

               
               2-260, gnl|loxAfr1|scaffold_40203 (4915-4675)
               

               
               2-260, gnl|mm7|chr17 (27085660-27085888)
               

               
               2-260, gnl|Mm7|chr17 (27085945-27085681)
               

               
               2-260, gnl|oryCun1|scaffold_187478 (12821-12566)
               

               
               2-260, gnl|panTro1|chr5 (36859366-36859615)
               

               
               2-260, gnl|rheMac2|chr4 (36077013-36077262)
               

               
               2-260, gnl|rn3|chr20 (7181595-7181856)
               


               
               262-410, gnl|bosTau2|chr23 (9487065-9486917)
               

               
               262-410, gnl|Hg17|chr6 (36393147-36392999)
               

               
               262-410, gnl|Mm7|chr17 (27085120-27084980)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               col (0.195008)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	2-260, gnl\|bosTau2\|chr23 (9489045-9488802)
	2-260, gnl\|canFam2\|chr12 (8430314-8430538)
	2-260, gnl\|echTel1\|scaffold_323142 (17633-17372)
	2-260, gnl\|hg17\|chr6 (36395062-36395311)
	2-260, gnl\|Hg17\|chr6 (36395368-36395113)
	2-260, gnl\|loxAfr1\|scaffold_40203 (4915-4675)
	2-260, gnl\|mm7\|chr17 (27085660-27085888)
	2-260, gnl\|Mm7\|chr17 (27085945-27085681)
	2-260, gnl\|oryCun1\|scaffold_187478 (12821-12566)
	2-260, gnl\|panTro1\|chr5 (36859366-36859615)
	2-260, gnl\|rheMac2\|chr4 (36077013-36077262)
	2-260, gnl\|rn3\|chr20 (7181595-7181856)

	262-410, gnl\|bosTau2\|chr23 (9487065-9486917)
	262-410, gnl\|Hg17\|chr6 (36393147-36392999)
	262-410, gnl\|Mm7\|chr17 (27085120-27084980)