Non-Coding RNA Search

rcol1007b_d9.y1

Sequence:


               
               CTCTGTCTTATTTTAATACCAAATTCATCACGTGTAGTGAAATTAATGTCAGGCGGTATT
TCTTGAGTGACTGAGCTCTTAATTATCTTATCTGTGTTTTAAGTGTTAACCCAAGGGAGA
CGTGCATTTTGTCGGCAACATTTATACACTGAAATGAATTGCTCCTGAGCGCTGTTTTCA
CATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGTCTTATTTTAATACCAAATTCATCACGTGTAGTGAAATTAATGTCAGGCGGTATT
TCTTGAGTGACTGAGCTCTTAATTATCTTATCTGTGTTTTAAGTGTTAACCCAAGGGAGA
CGTGCATTTTGTCGGCAACATTTATACACTGAAATGAATTGCTCCTGAGCGCTGTTTTCA
CATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-178, gnl|bosTau2|chr26 (17500442-17500617)
               

               
               1-178, gnl|canFam2|chr28 (18515963-18516157)
               

               
               1-178, gnl|dasNov1|scaffold_1510 (32692-32893)
               

               
               1-178, gnl|echTel1|scaffold_316991 (59572-59417)
               

               
               1-178, gnl|hg17|chr10 (104828187-104828379)
               

               
               1-178, gnl|Hg17|chr10 (104828259-104828428)
               

               
               1-178, gnl|loxAfr1|scaffold_1991 (125328-125133)
               

               
               1-178, gnl|mm7|chr19 (46779691-46779859)
               

               
               1-178, gnl|Mm7|chr19 (46779761-46779904)
               

               
               1-178, gnl|monDom2|scaffold_14 (60215300-60215106)
               

               
               1-178, gnl|panTro1|chr8 (106592713-106592905)
               

               
               1-178, gnl|rheMac2|chr9 (102765780-102765972)
               

               
               1-178, gnl|rn3|chr1 (252459761-252459924)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-178, gnl|bosTau2|chr26 (17500442-17500617)
               

               
               1-178, gnl|canFam2|chr28 (18515963-18516157)
               

               
               1-178, gnl|dasNov1|scaffold_1510 (32692-32893)
               

               
               1-178, gnl|echTel1|scaffold_316991 (59572-59417)
               

               
               1-178, gnl|hg17|chr10 (104828187-104828379)
               

               
               1-178, gnl|Hg17|chr10 (104828259-104828428)
               

               
               1-178, gnl|loxAfr1|scaffold_1991 (125328-125133)
               

               
               1-178, gnl|mm7|chr19 (46779691-46779859)
               

               
               1-178, gnl|Mm7|chr19 (46779761-46779904)
               

               
               1-178, gnl|monDom2|scaffold_14 (60215300-60215106)
               

               
               1-178, gnl|panTro1|chr8 (106592713-106592905)
               

               
               1-178, gnl|rheMac2|chr9 (102765780-102765972)
               

               
               1-178, gnl|rn3|chr1 (252459761-252459924)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	1-178, gnl\|bosTau2\|chr26 (17500442-17500617)
	1-178, gnl\|canFam2\|chr28 (18515963-18516157)
	1-178, gnl\|dasNov1\|scaffold_1510 (32692-32893)
	1-178, gnl\|echTel1\|scaffold_316991 (59572-59417)
	1-178, gnl\|hg17\|chr10 (104828187-104828379)
	1-178, gnl\|Hg17\|chr10 (104828259-104828428)
	1-178, gnl\|loxAfr1\|scaffold_1991 (125328-125133)
	1-178, gnl\|mm7\|chr19 (46779691-46779859)
	1-178, gnl\|Mm7\|chr19 (46779761-46779904)
	1-178, gnl\|monDom2\|scaffold_14 (60215300-60215106)
	1-178, gnl\|panTro1\|chr8 (106592713-106592905)
	1-178, gnl\|rheMac2\|chr9 (102765780-102765972)
	1-178, gnl\|rn3\|chr1 (252459761-252459924)