Non-Coding RNA Search

rcol1007b_m20.y1

Sequence:


               
               TGGGAGTTCCCGGTAGTTTGGTGATTAGAACTCAGCGCTTTCCCTGCTGTGGCCGGGGTT
CAGTCCCTGGTCTTGGAACTGAGATCCCACATCAAGGCGCAGTGGCTAGAAGTAAATAAA
TAAATAAAAATAATAAAATTTGATTTCTAACATTTAAAAACTACTCACAAGTCATGTCTC
CTGCCCAAGTCATGCCTCCTGCCCCAGCTTTATTTATTCCCAGCTACTTGCTCTTTATTC
TTAGGTCCAGTCTGACACCAGAGTGAGACTTTAGGGCTGCTGCTATTCCCTATGGCTGCC
CGCTGACCTGTGTCCCCAAACCCCTGATGGTTTTCGGCTCACCTGAGTGTCTCCACAGAT
GAGGATTCCTAGGGCAAGACTTCTGAGGGGAAGCAGAGTCACACCCAATAAATCTCATTT
CCATAGCTGGAGAATGCATGACAAATGGTTCTCCAACTAACAGTTCCAATCACTGGGGTT
TTGAAGGATATTTCCAGTACTTCAAAAAAATATATGAACTGTTTTATGATGGGACCGCAG
AGGTCAACCTGAAGTTACATTTCTTTATGTTGGGCTGTAATTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGAGTTCCCGGTAGTTTGGTGATTAGAACTCAGCGCTTTCCCTGCTGTGGCCGGGGTT
CAGTCCCTGGTCTTGGAACTGAGATCCCACATCAAGGCGCAGTGGCTAGAAGTAAATAAA
TAAATAAAAATAATAAAATTTGATTTCTAACATTTAAAAACTACTCACAAGTCATGTCTC
CTGCCCAAGTCATGCCTCCTGCCCCAGCTTTATTTATTCCCAGCTACTTGCTCTTTATTC
TTAGGTCCAGTCTGACACCAGAGTGAGACTTTAGGGCTGCTGCTATTCCCTATGGCTGCC
CGCTGACCTGTGTCCCCAAACCCCTGATGGTTTTCGGCTCACCTGAGTGTCTCCACAGAT
GAGGATTCCTAGGGCAAGACTTCTGAGGGGAAGCAGAGTCACACCCAATAAATCTCATTT
CCATAGCTGGAGAATGCATGACAAATGGTTCTCCAACTAACAGTTCCAATCACTGGGGTT
TTGAAGGATATTTCCAGTACTTCAAAAAAATATATGAACTGTTTTATGATGGGACCGCAG
AGGTCAACCTGAAGTTACATTTCTTTATGTTGGGCTGTAATTATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               186-303, + strand, RNAz p=0.996236

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-303, + strand, RNAz p=0.996236

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-139, gnl|bosTau2|chr25 (21438601-21438739)
               


               
               186-585, gnl|bosTau2|chr1 (82386641-82387049)
               

               
               186-585, gnl|Hg17|chr3 (139324389-139323714)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-139, gnl|bosTau2|chr25 (21438601-21438739)
               


               
               186-585, gnl|bosTau2|chr1 (82386641-82387049)
               

               
               186-585, gnl|Hg17|chr3 (139324389-139323714)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	2-139, gnl\|bosTau2\|chr25 (21438601-21438739)

	186-585, gnl\|bosTau2\|chr1 (82386641-82387049)
	186-585, gnl\|Hg17\|chr3 (139324389-139323714)