Non-Coding RNA Search

rcol1013b_f4.y1

Sequence:


               
               AAATAGAGTAGTAATCCCAAATCAGCCATGGTGATGAGAAAATAATACAAGTGAAAGTGC
GCACAAATAACACAGTTCTTGATCACACTGTTTTTGAAGAGCACATAGCCAAAAGTCATT
TGGAATTACAAATGTCTTTGGCATGCCACGAATTAGTTGTGTTGCTAAAGATTCATCTTC
ATAATTGTATTTTGCTTAGTCTAATATTAAAATTAGATAGAATTCCCCTGCATACCACAA
CTAACAAAAGACAGGTGTTGGGCAGTAGGGGAAAACCAAAATGGAATTAAGTTTTAAATT
TTATATTCATTGAACACAGAGCTTACTTTATAGTAATCTTAATGCTCTTACTTAAATAGC
AGTCCTCTGAAGTAGGCAACTCCCCTTATCCCCAGAAGAAGTTTGAGTGGAAAGGAAATG
GTTATAGGTTAAGCTATACAGACCTAATCAATACAGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATAGAGTAGTAATCCCAAATCAGCCATGGTGATGAGAAAATAATACAAGTGAAAGTGC
GCACAAATAACACAGTTCTTGATCACACTGTTTTTGAAGAGCACATAGCCAAAAGTCATT
TGGAATTACAAATGTCTTTGGCATGCCACGAATTAGTTGTGTTGCTAAAGATTCATCTTC
ATAATTGTATTTTGCTTAGTCTAATATTAAAATTAGATAGAATTCCCCTGCATACCACAA
CTAACAAAAGACAGGTGTTGGGCAGTAGGGGAAAACCAAAATGGAATTAAGTTTTAAATT
TTATATTCATTGAACACAGAGCTTACTTTATAGTAATCTTAATGCTCTTACTTAAATAGC
AGTCCTCTGAAGTAGGCAACTCCCCTTATCCCCAGAAGAAGTTTGAGTGGAAAGGAAATG
GTTATAGGTTAAGCTATACAGACCTAATCAATACAGACAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               73-186, - strand, RNAz p=0.574477

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-186, - strand, RNAz p=0.574477

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-315, gnl|bosTau2|chr8 (12137198-12136866)
               

               
               3-315, gnl|Hg17|chr9 (21988385-21988035)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-315, gnl|bosTau2|chr8 (12137198-12136866)
               

               
               3-315, gnl|Hg17|chr9 (21988385-21988035)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	3-315, gnl\|bosTau2\|chr8 (12137198-12136866)
	3-315, gnl\|Hg17\|chr9 (21988385-21988035)