Non-Coding RNA Search

rcol1016b_c10.y1

Sequence:


               
               AAGGTTGTGGGAAAAGCTTCTATGTACTACAGAGGCTGAAGGTGCACATGAGGACCCACA
ATGGGGAGAAGCCCTTTATGTGCCCCGAGTCTAGCTGTGGGAAGCAGTTCACTACAGCAG
G

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTTGTGGGAAAAGCTTCTATGTACTACAGAGGCTGAAGGTGCACATGAGGACCCACA
ATGGGGAGAAGCCCTTTATGTGCCCCGAGTCTAGCTGTGGGAAGCAGTTCACTACAGCAG
G

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-121, + strand, RNAz p=0.975451

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-121, + strand, RNAz p=0.975451

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC004357, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC004357, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               2-121, gnl|bosTau2|chr10 (60502398-60502517)
               

               
               2-121, gnl|canFam2|chr8 (50185372-50185595)
               

               
               2-121, gnl|danRer3|chr1 (1715359-1715566)
               

               
               2-121, gnl|dasNov1|scaffold_166341 (3777-3562)
               

               
               2-121, gnl|echTel1|scaffold_170085 (2538-2752)
               

               
               2-121, gnl|fr1|chrUn (51800205-51800424)
               

               
               2-121, gnl|galGal2|chr5 (34545202-34545410)
               

               
               2-121, gnl|hg17|chr14 (73441331-73441546)
               

               
               2-121, gnl|Hg17|chr14 (73441388-73441507)
               

               
               2-121, gnl|loxAfr1|scaffold_1035 (129376-129590)
               

               
               2-121, gnl|mm7|chr12 (82331578-82331791)
               

               
               2-121, gnl|Mm7|chr12 (82331633-82331752)
               

               
               2-121, gnl|monDom2|scaffold_8 (61038670-61038445)
               

               
               2-121, gnl|oryCun1|scaffold_187834 (55390-55605)
               

               
               2-121, gnl|panTro1|chr15 (73219400-73219615)
               

               
               2-121, gnl|rheMac2|chr7 (136998297-136998512)
               

               
               2-121, gnl|rn3|chr6 (108399984-108400197)
               

               
               2-121, gnl|tetNig1|chr14 (7164047-7164232)
               

               
               2-121, gnl|xenTro1|scaffold_423 (633635-633420)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-121, gnl|bosTau2|chr10 (60502398-60502517)
               

               
               2-121, gnl|canFam2|chr8 (50185372-50185595)
               

               
               2-121, gnl|danRer3|chr1 (1715359-1715566)
               

               
               2-121, gnl|dasNov1|scaffold_166341 (3777-3562)
               

               
               2-121, gnl|echTel1|scaffold_170085 (2538-2752)
               

               
               2-121, gnl|fr1|chrUn (51800205-51800424)
               

               
               2-121, gnl|galGal2|chr5 (34545202-34545410)
               

               
               2-121, gnl|hg17|chr14 (73441331-73441546)
               

               
               2-121, gnl|Hg17|chr14 (73441388-73441507)
               

               
               2-121, gnl|loxAfr1|scaffold_1035 (129376-129590)
               

               
               2-121, gnl|mm7|chr12 (82331578-82331791)
               

               
               2-121, gnl|Mm7|chr12 (82331633-82331752)
               

               
               2-121, gnl|monDom2|scaffold_8 (61038670-61038445)
               

               
               2-121, gnl|oryCun1|scaffold_187834 (55390-55605)
               

               
               2-121, gnl|panTro1|chr15 (73219400-73219615)
               

               
               2-121, gnl|rheMac2|chr7 (136998297-136998512)
               

               
               2-121, gnl|rn3|chr6 (108399984-108400197)
               

               
               2-121, gnl|tetNig1|chr14 (7164047-7164232)
               

               
               2-121, gnl|xenTro1|scaffold_423 (633635-633420)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	2-121, gnl\|bosTau2\|chr10 (60502398-60502517)
	2-121, gnl\|canFam2\|chr8 (50185372-50185595)
	2-121, gnl\|danRer3\|chr1 (1715359-1715566)
	2-121, gnl\|dasNov1\|scaffold_166341 (3777-3562)
	2-121, gnl\|echTel1\|scaffold_170085 (2538-2752)
	2-121, gnl\|fr1\|chrUn (51800205-51800424)
	2-121, gnl\|galGal2\|chr5 (34545202-34545410)
	2-121, gnl\|hg17\|chr14 (73441331-73441546)
	2-121, gnl\|Hg17\|chr14 (73441388-73441507)
	2-121, gnl\|loxAfr1\|scaffold_1035 (129376-129590)
	2-121, gnl\|mm7\|chr12 (82331578-82331791)
	2-121, gnl\|Mm7\|chr12 (82331633-82331752)
	2-121, gnl\|monDom2\|scaffold_8 (61038670-61038445)
	2-121, gnl\|oryCun1\|scaffold_187834 (55390-55605)
	2-121, gnl\|panTro1\|chr15 (73219400-73219615)
	2-121, gnl\|rheMac2\|chr7 (136998297-136998512)
	2-121, gnl\|rn3\|chr6 (108399984-108400197)
	2-121, gnl\|tetNig1\|chr14 (7164047-7164232)
	2-121, gnl\|xenTro1\|scaffold_423 (633635-633420)