Non-Coding RNA Search

rcol1019b_k19.y1

Sequence:


               
               CCTCGTGCCGCGCCTGCGGAGCCGCCCACGCCCGAGGGCTCCCCTATCATCAAGAGGAAG
CTGGGGGTGGATGGAGAGGAAGAGGAGCTGCCGCCGGAGCCGGAACCGGAGCCGGAGCCA
GAGCCTGAGAAAGCTGATGCTGAGAATGGGGAGAAGGAAGAAGTCCCCAAGCCCCCACCA
GAGCCCCCCAAGAAGACAGCTCCTCCTCCACCCCCTCCAAAGAAGGAGGAGGGTGGAAGC
GGGGGCCTGGAATTCTGGGGAGAACTGGAAGTACAGAGGGTGAAGTTCTTGAACTACCTC
TCCCGGAACTTTTACACTCTGCGATTCCTTGCCCTCTTCTTGGCATTTGCCATCAACTTC
ATCTTGCTGTTTTATAAGGTCTCGGACTCTCCACCAGGGGAGGATGACATGGAGGGCTCA
GCAGCCGGGGACCTGTCAGGTGCAGGCTCTGGTGGCGGCTCTGGTTGGGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGTGCCGCGCCTGCGGAGCCGCCCACGCCCGAGGGCTCCCCTATCATCAAGAGGAAG
CTGGGGGTGGATGGAGAGGAAGAGGAGCTGCCGCCGGAGCCGGAACCGGAGCCGGAGCCA
GAGCCTGAGAAAGCTGATGCTGAGAATGGGGAGAAGGAAGAAGTCCCCAAGCCCCCACCA
GAGCCCCCCAAGAAGACAGCTCCTCCTCCACCCCCTCCAAAGAAGGAGGAGGGTGGAAGC
GGGGGCCTGGAATTCTGGGGAGAACTGGAAGTACAGAGGGTGAAGTTCTTGAACTACCTC
TCCCGGAACTTTTACACTCTGCGATTCCTTGCCCTCTTCTTGGCATTTGCCATCAACTTC
ATCTTGCTGTTTTATAAGGTCTCGGACTCTCCACCAGGGGAGGATGACATGGAGGGCTCA
GCAGCCGGGGACCTGTCAGGTGCAGGCTCTGGTGGCGGCTCTGGTTGGGGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               138-291, - strand, RNAz p=0.999428
               

               
               186-291, - strand, RNAz p=0.999652

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-291, - strand, RNAz p=0.999428
               

               
               186-291, - strand, RNAz p=0.999652

Similar Transcript(s): 12 entry(ies)

More info

Similar Transcript(s): 12 entry(ies)

Help | Less info


               
               138-291, LIB4215-087-R1-K2-H8 LIB4215 Canis familiaris cDNA clone 
(gb|DN417733.1|), blast E-value=0, identity=94.81% 
               

               
               138-291, LIB4216-018-R1-K1-G9 LIB4216 Canis familiaris cDNA clone 
(gb|DN422315.1|), blast E-value=0, identity=94.81% 
               

               
               138-237, LIB4216-103-R1-K1-A4 LIB4216 Canis familiaris cDNA clone 
(gb|DN428191.1|), blast E-value=9e-37, identity=96.04% 
               

               
               138-291, LB03040.CR_O04 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE373922.1|), 
blast E-value=1.96182e-44, identity=90.26% 
               

               
               138-291, LB03043.CR_F19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE374553.1|), 
blast E-value=1.96182e-44, identity=90.26% 
               

               
               138-291, LB03077.CR_I19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE384925.1|), 
blast E-value=3.99931e-42, identity=89.61% 
               

               
               203-291, LM24HW01531 Bos taurus LM-24-HW cDNA library Bos taurus cDNA clone 
(gb|BM967487.1|), blast E-value=7e-18, identity=88.76% 
               

               
               186-291, LIB4215-087-R1-K2-H8 LIB4215 Canis familiaris cDNA clone 
(gb|DN417733.1|), blast E-value=3e-35, identity=93.4% 
               

               
               186-291, LIB4216-018-R1-K1-G9 LIB4216 Canis familiaris cDNA clone 
(gb|DN422315.1|), blast E-value=3e-35, identity=93.4% 
               

               
               186-291, LB03040.CR_O04 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE373922.1|), 
blast E-value=1e-25, identity=89.62% 
               

               
               186-291, LB03043.CR_F19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE374553.1|), 
blast E-value=1e-25, identity=89.62% 
               

               
               186-291, LB03077.CR_I19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE384925.1|), 
blast E-value=3e-23, identity=88.68%

Similar Transcript(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               138-291, LIB4215-087-R1-K2-H8 LIB4215 Canis familiaris cDNA clone 
(gb|DN417733.1|), blast E-value=0, identity=94.81% 
               

               
               138-291, LIB4216-018-R1-K1-G9 LIB4216 Canis familiaris cDNA clone 
(gb|DN422315.1|), blast E-value=0, identity=94.81% 
               

               
               138-237, LIB4216-103-R1-K1-A4 LIB4216 Canis familiaris cDNA clone 
(gb|DN428191.1|), blast E-value=9e-37, identity=96.04% 
               

               
               138-291, LB03040.CR_O04 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE373922.1|), 
blast E-value=1.96182e-44, identity=90.26% 
               

               
               138-291, LB03043.CR_F19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE374553.1|), 
blast E-value=1.96182e-44, identity=90.26% 
               

               
               138-291, LB03077.CR_I19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE384925.1|), 
blast E-value=3.99931e-42, identity=89.61% 
               

               
               203-291, LM24HW01531 Bos taurus LM-24-HW cDNA library Bos taurus cDNA clone 
(gb|BM967487.1|), blast E-value=7e-18, identity=88.76% 
               

               
               186-291, LIB4215-087-R1-K2-H8 LIB4215 Canis familiaris cDNA clone 
(gb|DN417733.1|), blast E-value=3e-35, identity=93.4% 
               

               
               186-291, LIB4216-018-R1-K1-G9 LIB4216 Canis familiaris cDNA clone 
(gb|DN422315.1|), blast E-value=3e-35, identity=93.4% 
               

               
               186-291, LB03040.CR_O04 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE373922.1|), 
blast E-value=1e-25, identity=89.62% 
               

               
               186-291, LB03043.CR_F19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE374553.1|), 
blast E-value=1e-25, identity=89.62% 
               

               
               186-291, LB03077.CR_I19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE384925.1|), 
blast E-value=3e-23, identity=88.68%

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               138-291, gnl|bosTau2|chr18 (40923197-40923044)
               

               
               138-291, gnl|canFam2|chr1 (117383882-117383770)
               

               
               138-291, gnl|danRer3|chr20 (37101001-37101119)
               

               
               138-291, gnl|echTel1|scaffold_213657 (847-956)
               

               
               138-291, gnl|fr1|chrUn (4886227-4886104)
               

               
               138-291, gnl|hg17|chr19 (43750244-43750356)
               

               
               138-291, gnl|Hg17|chr19 (43750253-43750397)
               

               
               138-291, gnl|loxAfr1|scaffold_49217 (16158-16046)
               

               
               138-291, gnl|mm7|chr7 (25952503-25952397)
               

               
               138-291, gnl|Mm7|chr7 (25952492-25952342)
               

               
               138-291, gnl|monDom2|scaffold_139 (611066-611179)
               

               
               138-291, gnl|oryCun1|scaffold_208207 (37473-37582)
               

               
               138-291, gnl|panTro1|chr20 (40662854-40662966)
               

               
               138-291, gnl|rheMac2|chr19 (44908275-44908387)
               

               
               138-291, gnl|rn3|chr1 (84210940-84210834)
               

               
               138-291, gnl|tetNig1|chr16 (6213485-6213625)
               

               
               138-291, gnl|xenTro1|scaffold_572 (659464-659588)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-291, gnl|bosTau2|chr18 (40923197-40923044)
               

               
               138-291, gnl|canFam2|chr1 (117383882-117383770)
               

               
               138-291, gnl|danRer3|chr20 (37101001-37101119)
               

               
               138-291, gnl|echTel1|scaffold_213657 (847-956)
               

               
               138-291, gnl|fr1|chrUn (4886227-4886104)
               

               
               138-291, gnl|hg17|chr19 (43750244-43750356)
               

               
               138-291, gnl|Hg17|chr19 (43750253-43750397)
               

               
               138-291, gnl|loxAfr1|scaffold_49217 (16158-16046)
               

               
               138-291, gnl|mm7|chr7 (25952503-25952397)
               

               
               138-291, gnl|Mm7|chr7 (25952492-25952342)
               

               
               138-291, gnl|monDom2|scaffold_139 (611066-611179)
               

               
               138-291, gnl|oryCun1|scaffold_208207 (37473-37582)
               

               
               138-291, gnl|panTro1|chr20 (40662854-40662966)
               

               
               138-291, gnl|rheMac2|chr19 (44908275-44908387)
               

               
               138-291, gnl|rn3|chr1 (84210940-84210834)
               

               
               138-291, gnl|tetNig1|chr16 (6213485-6213625)
               

               
               138-291, gnl|xenTro1|scaffold_572 (659464-659588)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               col (0.195008)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	138-291, - strand, RNAz p=0.999428
	186-291, - strand, RNAz p=0.999652

	138-291, LIB4215-087-R1-K2-H8 LIB4215 Canis familiaris cDNA clone (gb\|DN417733.1\|), blast E-value=0, identity=94.81%
	138-291, LIB4216-018-R1-K1-G9 LIB4216 Canis familiaris cDNA clone (gb\|DN422315.1\|), blast E-value=0, identity=94.81%
	138-237, LIB4216-103-R1-K1-A4 LIB4216 Canis familiaris cDNA clone (gb\|DN428191.1\|), blast E-value=9e-37, identity=96.04%
	138-291, LB03040.CR_O04 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE373922.1\|), blast E-value=1.96182e-44, identity=90.26%
	138-291, LB03043.CR_F19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE374553.1\|), blast E-value=1.96182e-44, identity=90.26%
	138-291, LB03077.CR_I19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE384925.1\|), blast E-value=3.99931e-42, identity=89.61%
	203-291, LM24HW01531 Bos taurus LM-24-HW cDNA library Bos taurus cDNA clone (gb\|BM967487.1\|), blast E-value=7e-18, identity=88.76%
	186-291, LIB4215-087-R1-K2-H8 LIB4215 Canis familiaris cDNA clone (gb\|DN417733.1\|), blast E-value=3e-35, identity=93.4%
	186-291, LIB4216-018-R1-K1-G9 LIB4216 Canis familiaris cDNA clone (gb\|DN422315.1\|), blast E-value=3e-35, identity=93.4%
	186-291, LB03040.CR_O04 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE373922.1\|), blast E-value=1e-25, identity=89.62%
	186-291, LB03043.CR_F19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE374553.1\|), blast E-value=1e-25, identity=89.62%
	186-291, LB03077.CR_I19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE384925.1\|), blast E-value=3e-23, identity=88.68%

	138-291, gnl\|bosTau2\|chr18 (40923197-40923044)
	138-291, gnl\|canFam2\|chr1 (117383882-117383770)
	138-291, gnl\|danRer3\|chr20 (37101001-37101119)
	138-291, gnl\|echTel1\|scaffold_213657 (847-956)
	138-291, gnl\|fr1\|chrUn (4886227-4886104)
	138-291, gnl\|hg17\|chr19 (43750244-43750356)
	138-291, gnl\|Hg17\|chr19 (43750253-43750397)
	138-291, gnl\|loxAfr1\|scaffold_49217 (16158-16046)
	138-291, gnl\|mm7\|chr7 (25952503-25952397)
	138-291, gnl\|Mm7\|chr7 (25952492-25952342)
	138-291, gnl\|monDom2\|scaffold_139 (611066-611179)
	138-291, gnl\|oryCun1\|scaffold_208207 (37473-37582)
	138-291, gnl\|panTro1\|chr20 (40662854-40662966)
	138-291, gnl\|rheMac2\|chr19 (44908275-44908387)
	138-291, gnl\|rn3\|chr1 (84210940-84210834)
	138-291, gnl\|tetNig1\|chr16 (6213485-6213625)
	138-291, gnl\|xenTro1\|scaffold_572 (659464-659588)