Non-Coding RNA Search

rcov11b_f6.y1

Sequence:


               
               TGTGACCCCATATATCAGGTACTTTGTGAGTTTTATCCTGCAGTTCCAGTTCCATCAAGC
TCTCTGCAAGGAGGCAGGCCACCAGGGCCCACTGCACCAGTGTGACATCTACCAGTCCAC
CCGGGCTGGGGCCAAGCTCCGGGCAGTGCTGCAGGCAGGCTCCTCGCGGCCCTGGCAGGA
GGTGCTGAAGGACATGGTTGGCTCAGGGGCCCTGGACGCTCAACCATTGCTCGACTACTT
CCAGCCGGTCACACAGTGGCTAGAGGAGCAGAACCAGCGGAGCGGCGATATCCTGGGCTG
GCCAGAATATCAGTGGCGCCCACCGATGCCCGACAATTACCCGGAGGGCATTGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGACCCCATATATCAGGTACTTTGTGAGTTTTATCCTGCAGTTCCAGTTCCATCAAGC
TCTCTGCAAGGAGGCAGGCCACCAGGGCCCACTGCACCAGTGTGACATCTACCAGTCCAC
CCGGGCTGGGGCCAAGCTCCGGGCAGTGCTGCAGGCAGGCTCCTCGCGGCCCTGGCAGGA
GGTGCTGAAGGACATGGTTGGCTCAGGGGCCCTGGACGCTCAACCATTGCTCGACTACTT
CCAGCCGGTCACACAGTGGCTAGAGGAGCAGAACCAGCGGAGCGGCGATATCCTGGGCTG
GCCAGAATATCAGTGGCGCCCACCGATGCCCGACAATTACCCGGAGGGCATTGACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q61265_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q61265_MOUSE

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               141-353, gnl|bosTau2|chr19 (40229394-40229606)
               

               
               141-353, gnl|canFam2|chr9 (14629770-14629940)
               

               
               141-353, gnl|danRer3|chr3 (17195153-17195323)
               

               
               141-353, gnl|dasNov1|scaffold_89855 (6032-5862)
               

               
               141-353, gnl|echTel1|scaffold_320855 (33137-33306)
               

               
               141-353, gnl|fr1|chrUn (192400216-192400055)
               

               
               141-353, gnl|galGal2|chr27 (1118970-1119149)
               

               
               141-353, gnl|hg17|chr17 (58915405-58915575)
               

               
               141-353, gnl|Hg17|chr17 (58915422-58915634)
               

               
               141-353, gnl|loxAfr1|scaffold_29461 (16160-15992)
               

               
               141-353, gnl|mm7|chr11 (106083690-106083860)
               

               
               141-353, gnl|Mm7|chr11 (106083707-106083919)
               

               
               141-353, gnl|monDom2|scaffold_18 (36164375-36164221)
               

               
               141-353, gnl|panTro1|chr19 (46222984-46222816)
               

               
               141-353, gnl|rheMac2|chr16 (59004644-59004814)
               

               
               141-353, gnl|rn3|chr10 (95382302-95382472)
               

               
               141-353, gnl|xenTro1|scaffold_127 (240559-240401)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-353, gnl|bosTau2|chr19 (40229394-40229606)
               

               
               141-353, gnl|canFam2|chr9 (14629770-14629940)
               

               
               141-353, gnl|danRer3|chr3 (17195153-17195323)
               

               
               141-353, gnl|dasNov1|scaffold_89855 (6032-5862)
               

               
               141-353, gnl|echTel1|scaffold_320855 (33137-33306)
               

               
               141-353, gnl|fr1|chrUn (192400216-192400055)
               

               
               141-353, gnl|galGal2|chr27 (1118970-1119149)
               

               
               141-353, gnl|hg17|chr17 (58915405-58915575)
               

               
               141-353, gnl|Hg17|chr17 (58915422-58915634)
               

               
               141-353, gnl|loxAfr1|scaffold_29461 (16160-15992)
               

               
               141-353, gnl|mm7|chr11 (106083690-106083860)
               

               
               141-353, gnl|Mm7|chr11 (106083707-106083919)
               

               
               141-353, gnl|monDom2|scaffold_18 (36164375-36164221)
               

               
               141-353, gnl|panTro1|chr19 (46222984-46222816)
               

               
               141-353, gnl|rheMac2|chr16 (59004644-59004814)
               

               
               141-353, gnl|rn3|chr10 (95382302-95382472)
               

               
               141-353, gnl|xenTro1|scaffold_127 (240559-240401)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	141-353, gnl\|bosTau2\|chr19 (40229394-40229606)
	141-353, gnl\|canFam2\|chr9 (14629770-14629940)
	141-353, gnl\|danRer3\|chr3 (17195153-17195323)
	141-353, gnl\|dasNov1\|scaffold_89855 (6032-5862)
	141-353, gnl\|echTel1\|scaffold_320855 (33137-33306)
	141-353, gnl\|fr1\|chrUn (192400216-192400055)
	141-353, gnl\|galGal2\|chr27 (1118970-1119149)
	141-353, gnl\|hg17\|chr17 (58915405-58915575)
	141-353, gnl\|Hg17\|chr17 (58915422-58915634)
	141-353, gnl\|loxAfr1\|scaffold_29461 (16160-15992)
	141-353, gnl\|mm7\|chr11 (106083690-106083860)
	141-353, gnl\|Mm7\|chr11 (106083707-106083919)
	141-353, gnl\|monDom2\|scaffold_18 (36164375-36164221)
	141-353, gnl\|panTro1\|chr19 (46222984-46222816)
	141-353, gnl\|rheMac2\|chr16 (59004644-59004814)
	141-353, gnl\|rn3\|chr10 (95382302-95382472)
	141-353, gnl\|xenTro1\|scaffold_127 (240559-240401)