Non-Coding RNA Search

rcov13b_i14.y1

Sequence:


               
               GGGCCCTTCACCTGCCCCCATTGTCCCCGTCATTTCCGCCGCCGCATCAGCTTCCTGCAG
CACCAGCAGCAGCACCAGGAGGAGTGGACAGTGGCCAGCTCTGGAACCCCAAAGGTGCCA
GCGGCGGGCAGAGGGGACTTGTCATTGCCCCCTCCACCCACACCCACGACCCCACTCCTG
CACCCTTCACCCCAGTGGCCTGCAGACCTCAGCTTCTCCCTCTGAAGTTCAACGTCTCCA
AAGATCAGAATAGGGGCAGGGGGCAGGGAAAGGCTTGATCTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCTTCACCTGCCCCCATTGTCCCCGTCATTTCCGCCGCCGCATCAGCTTCCTGCAG
CACCAGCAGCAGCACCAGGAGGAGTGGACAGTGGCCAGCTCTGGAACCCCAAAGGTGCCA
GCGGCGGGCAGAGGGGACTTGTCATTGCCCCCTCCACCCACACCCACGACCCCACTCCTG
CACCCTTCACCCCAGTGGCCTGCAGACCTCAGCTTCTCCCTCTGAAGTTCAACGTCTCCA
AAGATCAGAATAGGGGCAGGGGGCAGGGAAAGGCTTGATCTCCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61860708|ref|XP_618329.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61860708|ref|XP_618329.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               103-221, - strand, RNAz p=0.653326
               

               
               103-207, - strand, RNAz p=0.598252

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               103-221, - strand, RNAz p=0.653326
               

               
               103-207, - strand, RNAz p=0.598252

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               103-268, gnl|bosTau2|chr25 (22956978-22957142)
               

               
               103-268, gnl|canFam2|chr6 (20160214-20160031)
               

               
               103-268, gnl|dasNov1|scaffold_72830 (4445-4285)
               

               
               103-268, gnl|hg17|chr16 (31001783-31001962)
               

               
               103-268, gnl|Hg17|chr16 (31001792-31001956)
               

               
               103-268, gnl|loxAfr1|scaffold_27247 (29851-29674)
               

               
               103-268, gnl|mm7|chr7 (123981993-123982148)
               

               
               103-268, gnl|Mm7|chr7 (123982000-123982139)
               

               
               103-268, gnl|monDom2|scaffold_17 (9117107-9117352)
               

               
               103-268, gnl|oryCun1|scaffold_174362 (37147-37324)
               

               
               103-268, gnl|panTro1|chr18 (31794985-31795164)
               

               
               103-268, gnl|rheMac2|chr20 (29174310-29174487)
               

               
               103-268, gnl|rn3|chr1 (187318536-187318693)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-268, gnl|bosTau2|chr25 (22956978-22957142)
               

               
               103-268, gnl|canFam2|chr6 (20160214-20160031)
               

               
               103-268, gnl|dasNov1|scaffold_72830 (4445-4285)
               

               
               103-268, gnl|hg17|chr16 (31001783-31001962)
               

               
               103-268, gnl|Hg17|chr16 (31001792-31001956)
               

               
               103-268, gnl|loxAfr1|scaffold_27247 (29851-29674)
               

               
               103-268, gnl|mm7|chr7 (123981993-123982148)
               

               
               103-268, gnl|Mm7|chr7 (123982000-123982139)
               

               
               103-268, gnl|monDom2|scaffold_17 (9117107-9117352)
               

               
               103-268, gnl|oryCun1|scaffold_174362 (37147-37324)
               

               
               103-268, gnl|panTro1|chr18 (31794985-31795164)
               

               
               103-268, gnl|rheMac2|chr20 (29174310-29174487)
               

               
               103-268, gnl|rn3|chr1 (187318536-187318693)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	103-221, - strand, RNAz p=0.653326
	103-207, - strand, RNAz p=0.598252

	103-268, gnl\|bosTau2\|chr25 (22956978-22957142)
	103-268, gnl\|canFam2\|chr6 (20160214-20160031)
	103-268, gnl\|dasNov1\|scaffold_72830 (4445-4285)
	103-268, gnl\|hg17\|chr16 (31001783-31001962)
	103-268, gnl\|Hg17\|chr16 (31001792-31001956)
	103-268, gnl\|loxAfr1\|scaffold_27247 (29851-29674)
	103-268, gnl\|mm7\|chr7 (123981993-123982148)
	103-268, gnl\|Mm7\|chr7 (123982000-123982139)
	103-268, gnl\|monDom2\|scaffold_17 (9117107-9117352)
	103-268, gnl\|oryCun1\|scaffold_174362 (37147-37324)
	103-268, gnl\|panTro1\|chr18 (31794985-31795164)
	103-268, gnl\|rheMac2\|chr20 (29174310-29174487)
	103-268, gnl\|rn3\|chr1 (187318536-187318693)