Non-Coding RNA Search

rcov19b_n14.y1

Sequence:


               
               AGAGGCCGTGCAGGTCGTCTCTCTGAGCTATCCGGTACCATCCTCGTCGCTCCGGGGACA
TCTGCATCTGCTGCCGCCATGACTGAACAGATGACTCTCCGTGGCACCCTCAAGGGCCAT
AACGGCTGGGTGACCCAGATGGCTACCACTCCCCAGTTCCCGGACATGATACTGTCCGCT
TCTCGAGACAAGACCATCATCATGTGGAAGCTGACCAGAGATGAGACCAATTATGGAATC
CCACAGCGTGCTCTTCGGGGTCACTCCCACTTGGTTAGTGACGTGGTCATCTCCTCAGAT
GGCCAGTTTGCCCTCTCGGGCTCCTGGGATGGAACCCTTCGCCTCTGGGATCTCACAACG
GGCACCACCACGCGCCGATTTGTAGGCCATACTAAGGATGTGCTGAGTGTGGCCTTCTCC
TCTGACAACCGACAAATGGTCTCTGGCTCCCGAGATAAAACCATCAAGCTATGGAATACT
CTGGGTGTGTGCAAATACACTGTCCAGGATGAGAGCCACTCAGAGTGGGTGTCTTGTGTC
CGCTTCTCACCCAACAGCAGCAATCCCATTATGGTTTCCTGTGGCTGGGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGCCGTGCAGGTCGTCTCTCTGAGCTATCCGGTACCATCCTCGTCGCTCCGGGGACA
TCTGCATCTGCTGCCGCCATGACTGAACAGATGACTCTCCGTGGCACCCTCAAGGGCCAT
AACGGCTGGGTGACCCAGATGGCTACCACTCCCCAGTTCCCGGACATGATACTGTCCGCT
TCTCGAGACAAGACCATCATCATGTGGAAGCTGACCAGAGATGAGACCAATTATGGAATC
CCACAGCGTGCTCTTCGGGGTCACTCCCACTTGGTTAGTGACGTGGTCATCTCCTCAGAT
GGCCAGTTTGCCCTCTCGGGCTCCTGGGATGGAACCCTTCGCCTCTGGGATCTCACAACG
GGCACCACCACGCGCCGATTTGTAGGCCATACTAAGGATGTGCTGAGTGTGGCCTTCTCC
TCTGACAACCGACAAATGGTCTCTGGCTCCCGAGATAAAACCATCAAGCTATGGAATACT
CTGGGTGTGTGCAAATACACTGTCCAGGATGAGAGCCACTCAGAGTGGGTGTCTTGTGTC
CGCTTCTCACCCAACAGCAGCAATCCCATTATGGTTTCCTGTGGCTGGGACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37724561|gb|AAO21313.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37724561|gb|AAO21313.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               186-344, - strand, RNAz p=0.997564
               

               
               245-360, + strand, RNAz p=0.903953

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-344, - strand, RNAz p=0.997564
               

               
               245-360, + strand, RNAz p=0.903953

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               186-360, gnl|bosTau2|chr7 (27011214-27011040)
               

               
               186-360, gnl|canFam2|chr11 (3432098-3432268)
               

               
               186-360, gnl|danRer3|chr14 (2921296-2921466)
               

               
               186-360, gnl|dasNov1|scaffold_42207 (42757-42592)
               

               
               186-360, gnl|echTel1|scaffold_5256 (700-867)
               

               
               186-360, gnl|fr1|chrUn (114182527-114182697)
               

               
               186-360, gnl|hg17|chr4 (94100979-94101149)
               

               
               186-360, gnl|Hg17|chr5 (180601953-180601779)
               

               
               186-360, gnl|loxAfr1|scaffold_52614 (14407-14577)
               

               
               186-360, gnl|mm7|chr11 (48758586-48758417)
               

               
               186-360, gnl|Mm7|chr11 (48758414-48758588)
               

               
               186-360, gnl|monDom2|scaffold_43 (7042863-7042704)
               

               
               186-360, gnl|oryCun1|scaffold_176834 (49061-49230)
               

               
               186-360, gnl|panTro1|chr3 (110218770-110218940)
               

               
               186-360, gnl|rheMac2|chr5 (85792580-85792750)
               

               
               186-360, gnl|rn3|chr3 (133129006-133128858)
               

               
               186-360, gnl|tetNig1|chr1 (917180-917010)
               

               
               186-360, gnl|xenTro1|scaffold_105 (52347-52177)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               186-360, gnl|bosTau2|chr7 (27011214-27011040)
               

               
               186-360, gnl|canFam2|chr11 (3432098-3432268)
               

               
               186-360, gnl|danRer3|chr14 (2921296-2921466)
               

               
               186-360, gnl|dasNov1|scaffold_42207 (42757-42592)
               

               
               186-360, gnl|echTel1|scaffold_5256 (700-867)
               

               
               186-360, gnl|fr1|chrUn (114182527-114182697)
               

               
               186-360, gnl|hg17|chr4 (94100979-94101149)
               

               
               186-360, gnl|Hg17|chr5 (180601953-180601779)
               

               
               186-360, gnl|loxAfr1|scaffold_52614 (14407-14577)
               

               
               186-360, gnl|mm7|chr11 (48758586-48758417)
               

               
               186-360, gnl|Mm7|chr11 (48758414-48758588)
               

               
               186-360, gnl|monDom2|scaffold_43 (7042863-7042704)
               

               
               186-360, gnl|oryCun1|scaffold_176834 (49061-49230)
               

               
               186-360, gnl|panTro1|chr3 (110218770-110218940)
               

               
               186-360, gnl|rheMac2|chr5 (85792580-85792750)
               

               
               186-360, gnl|rn3|chr3 (133129006-133128858)
               

               
               186-360, gnl|tetNig1|chr1 (917180-917010)
               

               
               186-360, gnl|xenTro1|scaffold_105 (52347-52177)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	186-344, - strand, RNAz p=0.997564
	245-360, + strand, RNAz p=0.903953

	186-360, gnl\|bosTau2\|chr7 (27011214-27011040)
	186-360, gnl\|canFam2\|chr11 (3432098-3432268)
	186-360, gnl\|danRer3\|chr14 (2921296-2921466)
	186-360, gnl\|dasNov1\|scaffold_42207 (42757-42592)
	186-360, gnl\|echTel1\|scaffold_5256 (700-867)
	186-360, gnl\|fr1\|chrUn (114182527-114182697)
	186-360, gnl\|hg17\|chr4 (94100979-94101149)
	186-360, gnl\|Hg17\|chr5 (180601953-180601779)
	186-360, gnl\|loxAfr1\|scaffold_52614 (14407-14577)
	186-360, gnl\|mm7\|chr11 (48758586-48758417)
	186-360, gnl\|Mm7\|chr11 (48758414-48758588)
	186-360, gnl\|monDom2\|scaffold_43 (7042863-7042704)
	186-360, gnl\|oryCun1\|scaffold_176834 (49061-49230)
	186-360, gnl\|panTro1\|chr3 (110218770-110218940)
	186-360, gnl\|rheMac2\|chr5 (85792580-85792750)
	186-360, gnl\|rn3\|chr3 (133129006-133128858)
	186-360, gnl\|tetNig1\|chr1 (917180-917010)
	186-360, gnl\|xenTro1\|scaffold_105 (52347-52177)