Non-Coding RNA Search

rcov20b_o19.y1

Sequence:


               
               GCTGGACCGCCACCCCTCGGGGAGCTACCCCCGGGCTACGCATCCCCAGATGGATCTGCA
GCACCCCAGATCCTAGCTGGGAGCCTGAAGGCTCCCCTCTGGCTGTGTGCTTCCTTCCAG
GGCCTGCTCTTCTCTCTGGGCTGCGCGGTCCAGAGACACTGTGGCAAAGTACTCTTCCTG
GGACTGTTGGCCTTTGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGACCGCCACCCCTCGGGGAGCTACCCCCGGGCTACGCATCCCCAGATGGATCTGCA
GCACCCCAGATCCTAGCTGGGAGCCTGAAGGCTCCCCTCTGGCTGTGTGCTTCCTTCCAG
GGCCTGCTCTTCTCTCTGGGCTGCGCGGTCCAGAGACACTGTGGCAAAGTACTCTTCCTG
GGACTGTTGGCCTTTGGGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               65-183, - strand, RNAz p=0.881305

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               65-183, - strand, RNAz p=0.881305

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               65-200, gnl|bosTau2|chr3 (68191156-68191021)
               

               
               65-200, gnl|canFam2|chr15 (18494590-18494368)
               

               
               65-200, gnl|danRer3|chr2 (24504139-24503924)
               

               
               65-200, gnl|echTel1|scaffold_195376 (1526-1311)
               

               
               65-200, gnl|fr1|chrUn (271570858-271570640)
               

               
               65-200, gnl|hg17|chr1 (44976607-44976829)
               

               
               65-200, gnl|Hg17|chr1 (44976809-44976674)
               

               
               65-200, gnl|mm7|chr4 (116473485-116473261)
               

               
               65-200, gnl|Mm7|chr4 (116473281-116473416)
               

               
               65-200, gnl|monDom2|scaffold_70 (7926278-7926043)
               

               
               65-200, gnl|oryCun1|scaffold_198390 (53102-53324)
               

               
               65-200, gnl|panTro1|chr1_random (65698859-65698637)
               

               
               65-200, gnl|rheMac2|chr1 (47771404-47771626)
               

               
               65-200, gnl|rn3|chr5 (137413906-137413680)
               

               
               65-200, gnl|tetNig1|chr15 (5977735-5977519)
               

               
               65-200, gnl|xenTro1|scaffold_313 (1289463-1289259)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-200, gnl|bosTau2|chr3 (68191156-68191021)
               

               
               65-200, gnl|canFam2|chr15 (18494590-18494368)
               

               
               65-200, gnl|danRer3|chr2 (24504139-24503924)
               

               
               65-200, gnl|echTel1|scaffold_195376 (1526-1311)
               

               
               65-200, gnl|fr1|chrUn (271570858-271570640)
               

               
               65-200, gnl|hg17|chr1 (44976607-44976829)
               

               
               65-200, gnl|Hg17|chr1 (44976809-44976674)
               

               
               65-200, gnl|mm7|chr4 (116473485-116473261)
               

               
               65-200, gnl|Mm7|chr4 (116473281-116473416)
               

               
               65-200, gnl|monDom2|scaffold_70 (7926278-7926043)
               

               
               65-200, gnl|oryCun1|scaffold_198390 (53102-53324)
               

               
               65-200, gnl|panTro1|chr1_random (65698859-65698637)
               

               
               65-200, gnl|rheMac2|chr1 (47771404-47771626)
               

               
               65-200, gnl|rn3|chr5 (137413906-137413680)
               

               
               65-200, gnl|tetNig1|chr15 (5977735-5977519)
               

               
               65-200, gnl|xenTro1|scaffold_313 (1289463-1289259)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	65-200, gnl\|bosTau2\|chr3 (68191156-68191021)
	65-200, gnl\|canFam2\|chr15 (18494590-18494368)
	65-200, gnl\|danRer3\|chr2 (24504139-24503924)
	65-200, gnl\|echTel1\|scaffold_195376 (1526-1311)
	65-200, gnl\|fr1\|chrUn (271570858-271570640)
	65-200, gnl\|hg17\|chr1 (44976607-44976829)
	65-200, gnl\|Hg17\|chr1 (44976809-44976674)
	65-200, gnl\|mm7\|chr4 (116473485-116473261)
	65-200, gnl\|Mm7\|chr4 (116473281-116473416)
	65-200, gnl\|monDom2\|scaffold_70 (7926278-7926043)
	65-200, gnl\|oryCun1\|scaffold_198390 (53102-53324)
	65-200, gnl\|panTro1\|chr1_random (65698859-65698637)
	65-200, gnl\|rheMac2\|chr1 (47771404-47771626)
	65-200, gnl\|rn3\|chr5 (137413906-137413680)
	65-200, gnl\|tetNig1\|chr15 (5977735-5977519)
	65-200, gnl\|xenTro1\|scaffold_313 (1289463-1289259)