Non-Coding RNA Search

rcov22b_j23.y1

Sequence:


               
               AGAAATTTCCCGGAGAAACAAGGGGAATACCCACCAAGTGCCTGTCAAGAATGAAGTAGA
CAATTGTGAGACTTTGAAAAAGGTTGACACAAAGTCTTCTTCAGAAAAGAAGATTCACAG
AGCATCTAAAGAAGACATGTGTTCTGAGAAACAGGATATGCCATCAGTCGAGCAAGAAGA
TCCTTATAGGAAGAAGAAGCTTCAAGAGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAATTTCCCGGAGAAACAAGGGGAATACCCACCAAGTGCCTGTCAAGAATGAAGTAGA
CAATTGTGAGACTTTGAAAAAGGTTGACACAAAGTCTTCTTCAGAAAAGAAGATTCACAG
AGCATCTAAAGAAGACATGTGTTCTGAGAAACAGGATATGCCATCAGTCGAGCAAGAAGA
TCCTTATAGGAAGAAGAAGCTTCAAGAGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               23-172, - strand, RNAz p=0.975337

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               23-172, - strand, RNAz p=0.975337

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               23-172, gnl|bosTau2|chr17 (3001075-3000926)
               

               
               23-172, gnl|canFam2|chr15 (54425731-54425935)
               

               
               23-172, gnl|dasNov1|scaffold_5163 (12235-12028)
               

               
               23-172, gnl|echTel1|scaffold_202147 (873-1058)
               

               
               23-172, gnl|galGal2|chr4 (20600547-20600754)
               

               
               23-172, gnl|hg17|chr4 (154890997-154891199)
               

               
               23-172, gnl|Hg17|chr4 (154891008-154891157)
               

               
               23-172, gnl|loxAfr1|scaffold_1214 (102633-102415)
               

               
               23-172, gnl|mm7|chr3 (84032818-84032618)
               

               
               23-172, gnl|Mm7|chr3 (84032805-84032656)
               

               
               23-172, gnl|monDom2|scaffold_9 (23934955-23935154)
               

               
               23-172, gnl|panTro1|chr3_random (21245189-21244987)
               

               
               23-172, gnl|rheMac2|chr5 (145818511-145818716)
               

               
               23-172, gnl|rn3|chr2 (175638659-175638454)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-172, gnl|bosTau2|chr17 (3001075-3000926)
               

               
               23-172, gnl|canFam2|chr15 (54425731-54425935)
               

               
               23-172, gnl|dasNov1|scaffold_5163 (12235-12028)
               

               
               23-172, gnl|echTel1|scaffold_202147 (873-1058)
               

               
               23-172, gnl|galGal2|chr4 (20600547-20600754)
               

               
               23-172, gnl|hg17|chr4 (154890997-154891199)
               

               
               23-172, gnl|Hg17|chr4 (154891008-154891157)
               

               
               23-172, gnl|loxAfr1|scaffold_1214 (102633-102415)
               

               
               23-172, gnl|mm7|chr3 (84032818-84032618)
               

               
               23-172, gnl|Mm7|chr3 (84032805-84032656)
               

               
               23-172, gnl|monDom2|scaffold_9 (23934955-23935154)
               

               
               23-172, gnl|panTro1|chr3_random (21245189-21244987)
               

               
               23-172, gnl|rheMac2|chr5 (145818511-145818716)
               

               
               23-172, gnl|rn3|chr2 (175638659-175638454)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	23-172, gnl\|bosTau2\|chr17 (3001075-3000926)
	23-172, gnl\|canFam2\|chr15 (54425731-54425935)
	23-172, gnl\|dasNov1\|scaffold_5163 (12235-12028)
	23-172, gnl\|echTel1\|scaffold_202147 (873-1058)
	23-172, gnl\|galGal2\|chr4 (20600547-20600754)
	23-172, gnl\|hg17\|chr4 (154890997-154891199)
	23-172, gnl\|Hg17\|chr4 (154891008-154891157)
	23-172, gnl\|loxAfr1\|scaffold_1214 (102633-102415)
	23-172, gnl\|mm7\|chr3 (84032818-84032618)
	23-172, gnl\|Mm7\|chr3 (84032805-84032656)
	23-172, gnl\|monDom2\|scaffold_9 (23934955-23935154)
	23-172, gnl\|panTro1\|chr3_random (21245189-21244987)
	23-172, gnl\|rheMac2\|chr5 (145818511-145818716)
	23-172, gnl\|rn3\|chr2 (175638659-175638454)