rcov23b_b16.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGCTTCTCTTCACATCAGTGATCTTGTGCTCCCTGACGTTGGGCAGGGGTGCAGTGTAC ACTTCTGAACCAGAAGTCAGAGTTGCTGAGAACAAACCTGCCAAGCTGTCCTGCTCCTAC TCCGGGTTCTCCTCTCCCCGTGTGGAGTGGAAATTTACCCATGGCGACATCACCAGCCTC GTCTGCTATAACAACAAGATCACAGCTTCCTATGAGAACCGAGTTACCTTCTCGGCTAGT GGCATCACCTTCCATTCTGTGACCAGGAAAGACACAGGGACGTATACTTGTATGGTCTCT GACGAAGGCGGCAACACCTACGGGGAAGTCACTGTTAACCTCATTGTGCTTGTGCCTCCA TCGAAGCCTACAATCAGTGTTCCCTCCTCTGCTACCATCGGGAACCGGGCTGTGCTGACC TGCTCAGAGAAAGATGGTTCCCCACCCTCTGAATACTTCTGGTTCAAGGATGGGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGCTTCTCTTCACATCAGTGATCTTGTGCTCCCTGACGTTGGGCAGGGGTGCAGTGTAC ACTTCTGAACCAGAAGTCAGAGTTGCTGAGAACAAACCTGCCAAGCTGTCCTGCTCCTAC TCCGGGTTCTCCTCTCCCCGTGTGGAGTGGAAATTTACCCATGGCGACATCACCAGCCTC GTCTGCTATAACAACAAGATCACAGCTTCCTATGAGAACCGAGTTACCTTCTCGGCTAGT GGCATCACCTTCCATTCTGTGACCAGGAAAGACACAGGGACGTATACTTGTATGGTCTCT GACGAAGGCGGCAACACCTACGGGGAAGTCACTGTTAACCTCATTGTGCTTGTGCCTCCA TCGAAGCCTACAATCAGTGTTCCCTCCTCTGCTACCATCGGGAACCGGGCTGTGCTGACC TGCTCAGAGAAAGATGGTTCCCCACCCTCTGAATACTTCTGGTTCAAGGATGGGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 372-476, + strand, RNAz p=0.759727 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 372-476, + strand, RNAz p=0.759727 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 203-350, gnl|bosTau2|chr3 (7798870-7799017) | |
| 203-350, gnl|canFam2|chr38 (24452218-24452115) | |
| 203-350, gnl|echTel1|scaffold_238802 (9896-9793) | |
| 203-350, gnl|fr1|chrUn (176750299-176750202) | |
| 203-350, gnl|hg17|chr1 (157783485-157783588) | |
| 203-350, gnl|Hg17|chr1 (157783643-157783496) | |
| 203-350, gnl|mm7|chr1 (171431079-171430976) | |
| 203-350, gnl|Mm7|chr1 (171430919-171431066) | |
| 203-350, gnl|monDom2|scaffold_0 (28895399-28895302) | |
| 203-350, gnl|oryCun1|scaffold_175296 (52314-52414) | |
| 203-350, gnl|panTro1|chr1 (139848827-139848930) | |
| 203-350, gnl|rheMac2|chr1 (139615589-139615692) | |
| 203-350, gnl|rn3|chr13 (87579305-87579202) | |
| 352-476, gnl|bosTau2|chr3 (7799318-7799442) | |
| 352-476, gnl|canFam2|chr38 (24452700-24452479) | |
| 352-476, gnl|dasNov1|scaffold_209080 (3583-3357) | |
| 352-476, gnl|echTel1|scaffold_238802 (10380-10160) | |
| 352-476, gnl|fr1|chrUn (176750653-176750430) | |
| 352-476, gnl|hg17|chr1 (157783003-157783226) | |
| 352-476, gnl|Hg17|chr1 (157783212-157783088) | |
| 352-476, gnl|mm7|chr1 (171431507-171431270) | |
| 352-476, gnl|Mm7|chr1 (171431293-171431417) | |
| 352-476, gnl|monDom2|scaffold_0 (28896110-28895891) | |
| 352-476, gnl|oryCun1|scaffold_175296 (51873-52097) | |
| 352-476, gnl|panTro1|chr1 (139848346-139848569) | |
| 352-476, gnl|rheMac2|chr1 (139615108-139615331) | |
| 352-476, gnl|rn3|chr13 (87579751-87579521) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 203-350, gnl|bosTau2|chr3 (7798870-7799017) | |
| 203-350, gnl|canFam2|chr38 (24452218-24452115) | |
| 203-350, gnl|echTel1|scaffold_238802 (9896-9793) | |
| 203-350, gnl|fr1|chrUn (176750299-176750202) | |
| 203-350, gnl|hg17|chr1 (157783485-157783588) | |
| 203-350, gnl|Hg17|chr1 (157783643-157783496) | |
| 203-350, gnl|mm7|chr1 (171431079-171430976) | |
| 203-350, gnl|Mm7|chr1 (171430919-171431066) | |
| 203-350, gnl|monDom2|scaffold_0 (28895399-28895302) | |
| 203-350, gnl|oryCun1|scaffold_175296 (52314-52414) | |
| 203-350, gnl|panTro1|chr1 (139848827-139848930) | |
| 203-350, gnl|rheMac2|chr1 (139615589-139615692) | |
| 203-350, gnl|rn3|chr13 (87579305-87579202) | |
| 352-476, gnl|bosTau2|chr3 (7799318-7799442) | |
| 352-476, gnl|canFam2|chr38 (24452700-24452479) | |
| 352-476, gnl|dasNov1|scaffold_209080 (3583-3357) | |
| 352-476, gnl|echTel1|scaffold_238802 (10380-10160) | |
| 352-476, gnl|fr1|chrUn (176750653-176750430) | |
| 352-476, gnl|hg17|chr1 (157783003-157783226) | |
| 352-476, gnl|Hg17|chr1 (157783212-157783088) | |
| 352-476, gnl|mm7|chr1 (171431507-171431270) | |
| 352-476, gnl|Mm7|chr1 (171431293-171431417) | |
| 352-476, gnl|monDom2|scaffold_0 (28896110-28895891) | |
| 352-476, gnl|oryCun1|scaffold_175296 (51873-52097) | |
| 352-476, gnl|panTro1|chr1 (139848346-139848569) | |
| 352-476, gnl|rheMac2|chr1 (139615108-139615331) | |
| 352-476, gnl|rn3|chr13 (87579751-87579521) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |