Non-Coding RNA Search

rcov25b_o3.y1

Sequence:


               
               CTTTGCCATGATGGACAAGAACGCCGACGGGAAGCTGACACTGCAGGAGTTCCAGGAAGG
CTCCAAGGCAGACCCGTCCATCGTGCAGGCGTTGTCCCTCTATGACGGGCTGGTATAGTC
CAAGGCCCAGAGTGGGATGCCTGGGAACCACTCGCCTCCTCCCGTGCCATGAGGCCGCCT
CCGCCCCGACGCCACCCTCCCGTGCCCATCCCGCCTTTCTCCGCATCCACACCCGGCCGG
GCTGCCCTGGGACGGCGAGGCCCGGCTCTCCTCTGCCCTGCCCCGCACACACCCGCCGCC
TGAAGCCACCGGCTCCAATTGCCAACATCCTTTGCTTGTCCAGAAAACACCACCACGGAT
GGGAAAAGGCTTCCAGCCCTCTGCAAAACCAAGGACTCGGCTGCTTCGCAGGCAGCCTCT
CGGTCCCTCCTGCTCTCCTGCGTGTGTGCTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGCCATGATGGACAAGAACGCCGACGGGAAGCTGACACTGCAGGAGTTCCAGGAAGG
CTCCAAGGCAGACCCGTCCATCGTGCAGGCGTTGTCCCTCTATGACGGGCTGGTATAGTC
CAAGGCCCAGAGTGGGATGCCTGGGAACCACTCGCCTCCTCCCGTGCCATGAGGCCGCCT
CCGCCCCGACGCCACCCTCCCGTGCCCATCCCGCCTTTCTCCGCATCCACACCCGGCCGG
GCTGCCCTGGGACGGCGAGGCCCGGCTCTCCTCTGCCCTGCCCCGCACACACCCGCCGCC
TGAAGCCACCGGCTCCAATTGCCAACATCCTTTGCTTGTCCAGAAAACACCACCACGGAT
GGGAAAAGGCTTCCAGCCCTCTGCAAAACCAAGGACTCGGCTGCTTCGCAGGCAGCCTCT
CGGTCCCTCCTGCTCTCCTGCGTGTGTGCTTTTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20302765|gb|AAM18887.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20302765|gb|AAM18887.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               337-430, - strand, RNAz p=0.753474

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               337-430, - strand, RNAz p=0.753474

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               136-459, gnl|bosTau2|chr11 (80765666-80765992)
               

               
               136-459, gnl|canFam2|chr9 (57009667-57009178)
               

               
               136-459, gnl|dasNov1|scaffold_51060 (432-901)
               

               
               136-459, gnl|echTel1|scaffold_173804 (494-24)
               

               
               136-459, gnl|hg17|chr9 (130074782-130075258)
               

               
               136-459, gnl|Hg17|chr9 (130074822-130075143)
               

               
               136-459, gnl|loxAfr1|scaffold_209035 (751-281)
               

               
               136-459, gnl|mm7|chr2 (31299554-31300015)
               

               
               136-459, gnl|Mm7|chr2 (31299594-31299902)
               

               
               136-459, gnl|monDom2|scaffold_51 (5366690-5367122)
               

               
               136-459, gnl|oryCun1|scaffold_143274 (12281-11836)
               

               
               136-459, gnl|panTro1|chr11 (114996922-114997398)
               

               
               136-459, gnl|rheMac2|chr15 (8594648-8594172)
               

               
               136-459, gnl|rn3|chr3 (10248364-10248828)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-459, gnl|bosTau2|chr11 (80765666-80765992)
               

               
               136-459, gnl|canFam2|chr9 (57009667-57009178)
               

               
               136-459, gnl|dasNov1|scaffold_51060 (432-901)
               

               
               136-459, gnl|echTel1|scaffold_173804 (494-24)
               

               
               136-459, gnl|hg17|chr9 (130074782-130075258)
               

               
               136-459, gnl|Hg17|chr9 (130074822-130075143)
               

               
               136-459, gnl|loxAfr1|scaffold_209035 (751-281)
               

               
               136-459, gnl|mm7|chr2 (31299554-31300015)
               

               
               136-459, gnl|Mm7|chr2 (31299594-31299902)
               

               
               136-459, gnl|monDom2|scaffold_51 (5366690-5367122)
               

               
               136-459, gnl|oryCun1|scaffold_143274 (12281-11836)
               

               
               136-459, gnl|panTro1|chr11 (114996922-114997398)
               

               
               136-459, gnl|rheMac2|chr15 (8594648-8594172)
               

               
               136-459, gnl|rn3|chr3 (10248364-10248828)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	136-459, gnl\|bosTau2\|chr11 (80765666-80765992)
	136-459, gnl\|canFam2\|chr9 (57009667-57009178)
	136-459, gnl\|dasNov1\|scaffold_51060 (432-901)
	136-459, gnl\|echTel1\|scaffold_173804 (494-24)
	136-459, gnl\|hg17\|chr9 (130074782-130075258)
	136-459, gnl\|Hg17\|chr9 (130074822-130075143)
	136-459, gnl\|loxAfr1\|scaffold_209035 (751-281)
	136-459, gnl\|mm7\|chr2 (31299554-31300015)
	136-459, gnl\|Mm7\|chr2 (31299594-31299902)
	136-459, gnl\|monDom2\|scaffold_51 (5366690-5367122)
	136-459, gnl\|oryCun1\|scaffold_143274 (12281-11836)
	136-459, gnl\|panTro1\|chr11 (114996922-114997398)
	136-459, gnl\|rheMac2\|chr15 (8594648-8594172)
	136-459, gnl\|rn3\|chr3 (10248364-10248828)