Non-Coding RNA Search

rcov28b_i1.y1

Sequence:


               
               TGATGATGATACAAATTTTGAAGAGTCTGAAGATGAGCTAAGAAATGAAGTGCTAGAATC
CCTGGAAAAACTCACGACGTCCAAAGAGGCAGAAAAAAGAGAAGAAGTTTCTGGTTCTTC
TAAGGATAATGAAAACTTAAGAGAGGGGACAGGCATGCAGAAATATGCAGAAATAAACGA
AGGTTTGGAGAATATTTCTACTCTATCTGATGACAAAATTTGTGTTGCAGAAGATGACCA
TGGAACTGCAACCACCAGTCAGAATATACAAGTGTGATTATTGAACTTTTTCTTAAGTAA
TAAGTTAGTGTCTATTACCTAGTGTCTTTTCAGATACAAGTCACAAATATTCATTTATGG
TAAGAGTTGTCCAGTAATCTCTAGGCTTAGTAGTTTTTCTCTCAATTTAGACAATAGGAC
TAACTTTAGAGTGTAGAAATGAATATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGATGATACAAATTTTGAAGAGTCTGAAGATGAGCTAAGAAATGAAGTGCTAGAATC
CCTGGAAAAACTCACGACGTCCAAAGAGGCAGAAAAAAGAGAAGAAGTTTCTGGTTCTTC
TAAGGATAATGAAAACTTAAGAGAGGGGACAGGCATGCAGAAATATGCAGAAATAAACGA
AGGTTTGGAGAATATTTCTACTCTATCTGATGACAAAATTTGTGTTGCAGAAGATGACCA
TGGAACTGCAACCACCAGTCAGAATATACAAGTGTGATTATTGAACTTTTTCTTAAGTAA
TAAGTTAGTGTCTATTACCTAGTGTCTTTTCAGATACAAGTCACAAATATTCATTTATGG
TAAGAGTTGTCCAGTAATCTCTAGGCTTAGTAGTTTTTCTCTCAATTTAGACAATAGGAC
TAACTTTAGAGTGTAGAAATGAATATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41202646|ref|XP_370726.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41202646|ref|XP_370726.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               93-206, + strand, RNAz p=0.671636

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-206, + strand, RNAz p=0.671636

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               13-448, gnl|bosTau2|chr12 (11232639-11232206)
               

               
               13-448, gnl|Hg17|chr13 (51509355-51508915)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-448, gnl|bosTau2|chr12 (11232639-11232206)
               

               
               13-448, gnl|Hg17|chr13 (51509355-51508915)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	13-448, gnl\|bosTau2\|chr12 (11232639-11232206)
	13-448, gnl\|Hg17\|chr13 (51509355-51508915)