Non-Coding RNA Search

rcov30b_l21.y1

Sequence:


               
               GCCAGGCAGAGCGTGTGGCAGAGCAAGAGGTTGGCAGCAAGATCAGTGTCTGGAGGGCAA
GTCACGGGGTGAATGTAACTAGATAAAGCTGGCCAGGAGTTTGGAAGGAAAAAGGCTCTG
GAGTGGTTGTCTTCCTGTGGTCCTTACGTGCCAGGCCCTGGAGGAGAGCAAAGTATGATT
CCTTTGCTCTGAATCACAGCACCTGGCTCTGGCAAAAAGTCTGACTGGGATGGTgggagt
tctctgggagctcagcgggttaagaatctagcattgtcattgctgtggcttggttactgc
tttggcgcaggttcgatcgctggcctgggaacttccccatgccaTGTGCGTGGGGCGGGC
AGGAAGAGGATGTTGGCTTTTAAAGAAGATGAGGGGATCTGGATGTGTAGGGGGCTCATC
CTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGGCAGAGCGTGTGGCAGAGCAAGAGGTTGGCAGCAAGATCAGTGTCTGGAGGGCAA
GTCACGGGGTGAATGTAACTAGATAAAGCTGGCCAGGAGTTTGGAAGGAAAAAGGCTCTG
GAGTGGTTGTCTTCCTGTGGTCCTTACGTGCCAGGCCCTGGAGGAGAGCAAAGTATGATT
CCTTTGCTCTGAATCACAGCACCTGGCTCTGGCAAAAAGTCTGACTGGGATGGTgggagt
tctctgggagctcagcgggttaagaatctagcattgtcattgctgtggcttggttactgc
tttggcgcaggttcgatcgctggcctgggaacttccccatgccaTGTGCGTGGGGCGGGC
AGGAAGAGGATGTTGGCTTTTAAAGAAGATGAGGGGATCTGGATGTGTAGGGGGCTCATC
CTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-211, - strand, RNAz p=0.817714
               

               
               77-189, - strand, RNAz p=0.608689

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-211, - strand, RNAz p=0.817714
               

               
               77-189, - strand, RNAz p=0.608689

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

Help | Less info


               
               1-211, gnl|bosTau2|chr18 (1739543-1739752)
               

               
               1-211, gnl|canFam2|chr5 (78286407-78285978)
               

               
               1-211, gnl|dasNov1|scaffold_115199 (3144-2732)
               

               
               1-211, gnl|hg17|chr16 (74068975-74069402)
               

               
               1-211, gnl|Hg17|chr16 (74069290-74069073)
               

               
               1-211, gnl|loxAfr1|scaffold_12805 (39969-39513)
               

               
               1-211, gnl|mm7|chr8 (110488234-110488605)
               

               
               1-211, gnl|panTro1|chr18 (68468823-68469240)
               

               
               1-211, gnl|rheMac2|chr20 (73587795-73588222)
               

               
               1-211, gnl|rn3|chr19 (41834433-41834749)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-211, gnl|bosTau2|chr18 (1739543-1739752)
               

               
               1-211, gnl|canFam2|chr5 (78286407-78285978)
               

               
               1-211, gnl|dasNov1|scaffold_115199 (3144-2732)
               

               
               1-211, gnl|hg17|chr16 (74068975-74069402)
               

               
               1-211, gnl|Hg17|chr16 (74069290-74069073)
               

               
               1-211, gnl|loxAfr1|scaffold_12805 (39969-39513)
               

               
               1-211, gnl|mm7|chr8 (110488234-110488605)
               

               
               1-211, gnl|panTro1|chr18 (68468823-68469240)
               

               
               1-211, gnl|rheMac2|chr20 (73587795-73588222)
               

               
               1-211, gnl|rn3|chr19 (41834433-41834749)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cov (0.132153)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	1-211, - strand, RNAz p=0.817714
	77-189, - strand, RNAz p=0.608689

	1-211, gnl\|bosTau2\|chr18 (1739543-1739752)
	1-211, gnl\|canFam2\|chr5 (78286407-78285978)
	1-211, gnl\|dasNov1\|scaffold_115199 (3144-2732)
	1-211, gnl\|hg17\|chr16 (74068975-74069402)
	1-211, gnl\|Hg17\|chr16 (74069290-74069073)
	1-211, gnl\|loxAfr1\|scaffold_12805 (39969-39513)
	1-211, gnl\|mm7\|chr8 (110488234-110488605)
	1-211, gnl\|panTro1\|chr18 (68468823-68469240)
	1-211, gnl\|rheMac2\|chr20 (73587795-73588222)
	1-211, gnl\|rn3\|chr19 (41834433-41834749)