Non-Coding RNA Search

rcov32b_n2.y1

Sequence:


               
               GCATGCTGCTGAAGCGAAGTGGCAAATCATTGAACAAAGAATGGAAAAAGAAATACGTCA
CCCTGTGTGACAACGTGCGTGCTGACCTACCATCCAAGTTTACACGACTACATGCAGAAC
GTTCATGGCAAAGAGATCGATCTTCTGAGAACCACTGTGAAAGTGCCAGGCAAGAGGCCC
CCCCGAGCCACGTCCGCCTGCGCGCCCATCTCCAGCCCCAAAACCAACGGCCTGGCCAAG
GACATGAGCAGCTTGCACGTCTCACCAAATTCAGGGAATGTCACTAGCGCGCCTGGGTCT
CAGATGGCGAGCGGCGTCAGCCTGGGCTCCTTGAGCGGCCGACCGGACGGCGTGCAGCAG
CGCTCCTACTCTGTCTCCAGTGCCGACCAGTGGAGTGAGGCTACGGTCATTGCAAACTCG
GCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATGCTGCTGAAGCGAAGTGGCAAATCATTGAACAAAGAATGGAAAAAGAAATACGTCA
CCCTGTGTGACAACGTGCGTGCTGACCTACCATCCAAGTTTACACGACTACATGCAGAAC
GTTCATGGCAAAGAGATCGATCTTCTGAGAACCACTGTGAAAGTGCCAGGCAAGAGGCCC
CCCCGAGCCACGTCCGCCTGCGCGCCCATCTCCAGCCCCAAAACCAACGGCCTGGCCAAG
GACATGAGCAGCTTGCACGTCTCACCAAATTCAGGGAATGTCACTAGCGCGCCTGGGTCT
CAGATGGCGAGCGGCGTCAGCCTGGGCTCCTTGAGCGGCCGACCGGACGGCGTGCAGCAG
CGCTCCTACTCTGTCTCCAGTGCCGACCAGTGGAGTGAGGCTACGGTCATTGCAAACTCG
GCCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34877624|ref|XP_343624.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34877624|ref|XP_343624.1|

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               102-289, gnl|bosTau2|chr3 (82028230-82028416)
               

               
               102-289, gnl|canFam2|chr25 (49819074-49819264)
               

               
               102-289, gnl|danRer3|chr6 (11301876-11301696)
               

               
               102-289, gnl|fr1|chrUn (192869350-192869172)
               

               
               102-289, gnl|galGal2|chr7 (5215406-5215225)
               

               
               102-289, gnl|hg17|chr2 (236599374-236599564)
               

               
               102-289, gnl|Hg17|chr2 (236599378-236599564)
               

               
               102-289, gnl|loxAfr1|scaffold_145076 (4225-4035)
               

               
               102-289, gnl|mm7|chr1 (89648497-89648687)
               

               
               102-289, gnl|Mm7|chr1 (89648501-89648683)
               

               
               102-289, gnl|monDom2|scaffold_2705 (2555-2745)
               

               
               102-289, gnl|oryCun1|scaffold_190810 (45346-45536)
               

               
               102-289, gnl|panTro1|chr13 (127457327-127457517)
               

               
               102-289, gnl|rheMac2|chr12 (99778406-99778596)
               

               
               102-289, gnl|rn3|chr9 (89054306-89054496)
               

               
               102-289, gnl|tetNig1|chrUn_random (66718947-66718777)
               

               
               102-289, gnl|xenTro1|scaffold_49 (1857957-1858130)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-289, gnl|bosTau2|chr3 (82028230-82028416)
               

               
               102-289, gnl|canFam2|chr25 (49819074-49819264)
               

               
               102-289, gnl|danRer3|chr6 (11301876-11301696)
               

               
               102-289, gnl|fr1|chrUn (192869350-192869172)
               

               
               102-289, gnl|galGal2|chr7 (5215406-5215225)
               

               
               102-289, gnl|hg17|chr2 (236599374-236599564)
               

               
               102-289, gnl|Hg17|chr2 (236599378-236599564)
               

               
               102-289, gnl|loxAfr1|scaffold_145076 (4225-4035)
               

               
               102-289, gnl|mm7|chr1 (89648497-89648687)
               

               
               102-289, gnl|Mm7|chr1 (89648501-89648683)
               

               
               102-289, gnl|monDom2|scaffold_2705 (2555-2745)
               

               
               102-289, gnl|oryCun1|scaffold_190810 (45346-45536)
               

               
               102-289, gnl|panTro1|chr13 (127457327-127457517)
               

               
               102-289, gnl|rheMac2|chr12 (99778406-99778596)
               

               
               102-289, gnl|rn3|chr9 (89054306-89054496)
               

               
               102-289, gnl|tetNig1|chrUn_random (66718947-66718777)
               

               
               102-289, gnl|xenTro1|scaffold_49 (1857957-1858130)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	102-289, gnl\|bosTau2\|chr3 (82028230-82028416)
	102-289, gnl\|canFam2\|chr25 (49819074-49819264)
	102-289, gnl\|danRer3\|chr6 (11301876-11301696)
	102-289, gnl\|fr1\|chrUn (192869350-192869172)
	102-289, gnl\|galGal2\|chr7 (5215406-5215225)
	102-289, gnl\|hg17\|chr2 (236599374-236599564)
	102-289, gnl\|Hg17\|chr2 (236599378-236599564)
	102-289, gnl\|loxAfr1\|scaffold_145076 (4225-4035)
	102-289, gnl\|mm7\|chr1 (89648497-89648687)
	102-289, gnl\|Mm7\|chr1 (89648501-89648683)
	102-289, gnl\|monDom2\|scaffold_2705 (2555-2745)
	102-289, gnl\|oryCun1\|scaffold_190810 (45346-45536)
	102-289, gnl\|panTro1\|chr13 (127457327-127457517)
	102-289, gnl\|rheMac2\|chr12 (99778406-99778596)
	102-289, gnl\|rn3\|chr9 (89054306-89054496)
	102-289, gnl\|tetNig1\|chrUn_random (66718947-66718777)
	102-289, gnl\|xenTro1\|scaffold_49 (1857957-1858130)