Non-Coding RNA Search

rcov34b_o18.y1

Sequence:


               
               TAGAGCTGCTGACAGTGCTGCCTGAGGAGTTCCAGACCAGCCGCCTGCCCCAGTAGCGCA
AAATGCCTGGTGCGGGCCAGCCTGGCAGTGGAGTGTGGGGCTGTCTTCCCGCTGCTGGAG
CAGCTGCTCCAGCAGCCCAGCTCACCTAGCTGTGTGCGTCAGAAGGTGCTCAAGTGCTTT
TCCAGCTGGGTGCAGCTGGAGGTGCCACTGCAGGACTGCGAGGCGCTCATTCAGGCCGCG
TTCTCGGCTCTGCAGGACTCGGAGCTCTTCGACAGCAGCGTGGAGGCCATCGTCAATGCC
ATCTCACAGCCCGATGCCCAGAGGTACGTGAACACACTCCTGAAACTCATCCCGCTGGTG
CTGGGACTGCAGGATCAACTGCGACAGGCCGTGCAGAATGGGGACATGGAGACCTCCCAC
GGCATCTGTCGCATTGCCGTGGCCCTGGGCGAGAACCACTCCCGGGCCCTGCTGGACCAG
GTGGAGCACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAGCTGCTGACAGTGCTGCCTGAGGAGTTCCAGACCAGCCGCCTGCCCCAGTAGCGCA
AAATGCCTGGTGCGGGCCAGCCTGGCAGTGGAGTGTGGGGCTGTCTTCCCGCTGCTGGAG
CAGCTGCTCCAGCAGCCCAGCTCACCTAGCTGTGTGCGTCAGAAGGTGCTCAAGTGCTTT
TCCAGCTGGGTGCAGCTGGAGGTGCCACTGCAGGACTGCGAGGCGCTCATTCAGGCCGCG
TTCTCGGCTCTGCAGGACTCGGAGCTCTTCGACAGCAGCGTGGAGGCCATCGTCAATGCC
ATCTCACAGCCCGATGCCCAGAGGTACGTGAACACACTCCTGAAACTCATCCCGCTGGTG
CTGGGACTGCAGGATCAACTGCGACAGGCCGTGCAGAATGGGGACATGGAGACCTCCCAC
GGCATCTGTCGCATTGCCGTGGCCCTGGGCGAGAACCACTCCCGGGCCCTGCTGGACCAG
GTGGAGCACTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-281, + strand, RNAz p=0.986003

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-281, + strand, RNAz p=0.986003

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               113-226, - strand, RNAmicro p=0.992825
               

               
               124-238, + strand, RNAmicro p=0.920447

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               113-226, - strand, RNAmicro p=0.992825
               

               
               124-238, + strand, RNAmicro p=0.920447

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               42-278, DA191221 BRAMY3 Homo sapiens cDNA clone BRAMY3014036 5', mRNA 
(dbj|DA191221.1|), blast E-value=0, identity=92.41% 
               

               
               42-278, DA630426 KIDNE2 Homo sapiens cDNA clone KIDNE2011596 5', mRNA 
(dbj|DA630426.1|), blast E-value=0, identity=92.41% 
               

               
               42-278, DKFZp470B1913_r1 470 (synonym (emb|CR773151.1|), blast E-value=0, 
identity=92.41% 
               

               
               42-278, LB02755.CR_G05 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE349433.1|), 
blast E-value=0, identity=94.09% 
               

               
               42-278, LB02984.CR_P22 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE366339.1|), 
blast E-value=0, identity=94.09% 
               

               
               42-278, LB03056.CR_C18 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE375119.1|), 
blast E-value=0, identity=93.67%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               42-278, DA191221 BRAMY3 Homo sapiens cDNA clone BRAMY3014036 5', mRNA 
(dbj|DA191221.1|), blast E-value=0, identity=92.41% 
               

               
               42-278, DA630426 KIDNE2 Homo sapiens cDNA clone KIDNE2011596 5', mRNA 
(dbj|DA630426.1|), blast E-value=0, identity=92.41% 
               

               
               42-278, DKFZp470B1913_r1 470 (synonym (emb|CR773151.1|), blast E-value=0, 
identity=92.41% 
               

               
               42-278, LB02755.CR_G05 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE349433.1|), 
blast E-value=0, identity=94.09% 
               

               
               42-278, LB02984.CR_P22 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE366339.1|), 
blast E-value=0, identity=94.09% 
               

               
               42-278, LB03056.CR_C18 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE375119.1|), 
blast E-value=0, identity=93.67%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-325, gnl|bosTau2|chr3 (71007643-71007322)
               

               
               3-325, gnl|Hg17|chr1 (44084599-44084920)
               

               
               3-325, gnl|Mm7|chr4 (117288531-117288210)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-325, gnl|bosTau2|chr3 (71007643-71007322)
               

               
               3-325, gnl|Hg17|chr1 (44084599-44084920)
               

               
               3-325, gnl|Mm7|chr4 (117288531-117288210)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	113-226, - strand, RNAmicro p=0.992825
	124-238, + strand, RNAmicro p=0.920447

	42-278, DA191221 BRAMY3 Homo sapiens cDNA clone BRAMY3014036 5', mRNA (dbj\|DA191221.1\|), blast E-value=0, identity=92.41%
	42-278, DA630426 KIDNE2 Homo sapiens cDNA clone KIDNE2011596 5', mRNA (dbj\|DA630426.1\|), blast E-value=0, identity=92.41%
	42-278, DKFZp470B1913_r1 470 (synonym (emb\|CR773151.1\|), blast E-value=0, identity=92.41%
	42-278, LB02755.CR_G05 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|EE349433.1\|), blast E-value=0, identity=94.09%
	42-278, LB02984.CR_P22 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE366339.1\|), blast E-value=0, identity=94.09%
	42-278, LB03056.CR_C18 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE375119.1\|), blast E-value=0, identity=93.67%

	3-325, gnl\|bosTau2\|chr3 (71007643-71007322)
	3-325, gnl\|Hg17\|chr1 (44084599-44084920)
	3-325, gnl\|Mm7\|chr4 (117288531-117288210)