Non-Coding RNA Search

rcov36b_k13.y1

Sequence:


               
               TTGTTCCCATGGACCTGCTGGATGCTGACCTTTGGGTCTGGGCCCTCTGGGAGCAGACTC
GAGATCCTTCCCAATGGAAGCGAGCCATTGGTCAAGGTCCTTTTGGAATGTCATCTGTAA
ACCCTGGCCCAAGGCCACCTTGCTGTGTCCCCTAGCCTGCTGGGAAGTCCTGCAGCATTC
TGGGAAATGAGGCAGGGGCAATGGCATGCCTGAGTGGCCTGGAGTCTGGCTGGTCCAGCC
TGGTGGTTGGGCTGCCTAAGAAAGAAGACAGGGCAGTCCCACCCACCCCTCCTTCAGGCT
GCCTAGGGGCAGCCTCTAGTCAAGCTGCTCTTGCCTAATAAGGTGATAGTCCCTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTCCCATGGACCTGCTGGATGCTGACCTTTGGGTCTGGGCCCTCTGGGAGCAGACTC
GAGATCCTTCCCAATGGAAGCGAGCCATTGGTCAAGGTCCTTTTGGAATGTCATCTGTAA
ACCCTGGCCCAAGGCCACCTTGCTGTGTCCCCTAGCCTGCTGGGAAGTCCTGCAGCATTC
TGGGAAATGAGGCAGGGGCAATGGCATGCCTGAGTGGCCTGGAGTCTGGCTGGTCCAGCC
TGGTGGTTGGGCTGCCTAAGAAAGAAGACAGGGCAGTCCCACCCACCCCTCCTTCAGGCT
GCCTAGGGGCAGCCTCTAGTCAAGCTGCTCTTGCCTAATAAGGTGATAGTCCCTATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               205-357, - strand, RNAz p=0.999959

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-357, - strand, RNAz p=0.999959

Similar Transcript(s): 3 entry(ies)

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Similar Transcript(s): 3 entry(ies)

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               224-318, SnEST4a01c11.y1 cSn 1 S neurona invitro merozoite cDNA Sarcocystis 
(gb|BE574402.2|), blast E-value=7e-19, identity=88.42% 
               

               
               224-318, 965525 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK778365.1|), 
blast E-value=7e-19, identity=88.42% 
               

               
               224-318, 000927BEMN028759HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY116265.1|), blast E-value=7e-19, identity=88.42%

Similar Transcript(s): 3 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               224-318, SnEST4a01c11.y1 cSn 1 S neurona invitro merozoite cDNA Sarcocystis 
(gb|BE574402.2|), blast E-value=7e-19, identity=88.42% 
               

               
               224-318, 965525 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK778365.1|), 
blast E-value=7e-19, identity=88.42% 
               

               
               224-318, 000927BEMN028759HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY116265.1|), blast E-value=7e-19, identity=88.42%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-357, gnl|bosTau2|chr13 (48192662-48192326)
               

               
               14-357, gnl|Hg17|chr20 (31843011-31843409)
               

               
               14-357, gnl|Mm7|chr2 (154387007-154387355)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-357, gnl|bosTau2|chr13 (48192662-48192326)
               

               
               14-357, gnl|Hg17|chr20 (31843011-31843409)
               

               
               14-357, gnl|Mm7|chr2 (154387007-154387355)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	224-318, SnEST4a01c11.y1 cSn 1 S neurona invitro merozoite cDNA Sarcocystis (gb\|BE574402.2\|), blast E-value=7e-19, identity=88.42%
	224-318, 965525 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK778365.1\|), blast E-value=7e-19, identity=88.42%
	224-318, 000927BEMN028759HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY116265.1\|), blast E-value=7e-19, identity=88.42%

	14-357, gnl\|bosTau2\|chr13 (48192662-48192326)
	14-357, gnl\|Hg17\|chr20 (31843011-31843409)
	14-357, gnl\|Mm7\|chr2 (154387007-154387355)