Non-Coding RNA Search

rcov37b_l14.y1

Sequence:


               
               CCCTGGAGGCCTCTGACCTGGGCTCCTCTTGCACCTCTTGCCCTGCCGGCTACTATATTG
ATCGGGATTCAGGAACCTGCCACTCCTGCCCGCCTAACACAATCCGTGAAAGCCCACCAG
CCTTACGGCGCCCAAGCCTGCATACGCTGTGGTCCAGGGACCAAGAGCAACAAGATCCAC
TCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGGAGGCCTCTGACCTGGGCTCCTCTTGCACCTCTTGCCCTGCCGGCTACTATATTG
ATCGGGATTCAGGAACCTGCCACTCCTGCCCGCCTAACACAATCCGTGAAAGCCCACCAG
CCTTACGGCGCCCAAGCCTGCATACGCTGTGGTCCAGGGACCAAGAGCAACAAGATCCAC
TCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               64-174, - strand, RNAz p=0.520649

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               64-174, - strand, RNAz p=0.520649

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-174, gnl|bosTau2|chr3 (31157952-31158124)
               

               
               1-174, gnl|canFam2|chr6 (45681078-45680863)
               

               
               1-174, gnl|danRer3|chr8 (15953818-15954029)
               

               
               1-174, gnl|dasNov1|scaffold_24630 (49523-49737)
               

               
               1-174, gnl|echTel1|scaffold_319338 (147407-147192)
               

               
               1-174, gnl|fr1|chrUn (21474521-21474306)
               

               
               1-174, gnl|galGal2|chr1 (3125154-3124940)
               

               
               1-174, gnl|hg17|chr1 (109447328-109447543)
               

               
               1-174, gnl|Hg17|chr1 (109447366-109447538)
               

               
               1-174, gnl|loxAfr1|scaffold_1838 (39976-40191)
               

               
               1-174, gnl|mm7|chr3 (108286253-108286043)
               

               
               1-174, gnl|Mm7|chr3 (108286213-108286042)
               

               
               1-174, gnl|monDom2|scaffold_0 (7497697-7497481)
               

               
               1-174, gnl|oryCun1|scaffold_209665 (32498-32713)
               

               
               1-174, gnl|panTro1|chr1 (108370599-108370814)
               

               
               1-174, gnl|rheMac2|chr1 (112241432-112241649)
               

               
               1-174, gnl|rn3|chr2 (203994382-203994167)
               

               
               1-174, gnl|tetNig1|chr9 (3194294-3194081)
               

               
               1-174, gnl|xenTro1|scaffold_566 (801768-801973)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-174, gnl|bosTau2|chr3 (31157952-31158124)
               

               
               1-174, gnl|canFam2|chr6 (45681078-45680863)
               

               
               1-174, gnl|danRer3|chr8 (15953818-15954029)
               

               
               1-174, gnl|dasNov1|scaffold_24630 (49523-49737)
               

               
               1-174, gnl|echTel1|scaffold_319338 (147407-147192)
               

               
               1-174, gnl|fr1|chrUn (21474521-21474306)
               

               
               1-174, gnl|galGal2|chr1 (3125154-3124940)
               

               
               1-174, gnl|hg17|chr1 (109447328-109447543)
               

               
               1-174, gnl|Hg17|chr1 (109447366-109447538)
               

               
               1-174, gnl|loxAfr1|scaffold_1838 (39976-40191)
               

               
               1-174, gnl|mm7|chr3 (108286253-108286043)
               

               
               1-174, gnl|Mm7|chr3 (108286213-108286042)
               

               
               1-174, gnl|monDom2|scaffold_0 (7497697-7497481)
               

               
               1-174, gnl|oryCun1|scaffold_209665 (32498-32713)
               

               
               1-174, gnl|panTro1|chr1 (108370599-108370814)
               

               
               1-174, gnl|rheMac2|chr1 (112241432-112241649)
               

               
               1-174, gnl|rn3|chr2 (203994382-203994167)
               

               
               1-174, gnl|tetNig1|chr9 (3194294-3194081)
               

               
               1-174, gnl|xenTro1|scaffold_566 (801768-801973)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	1-174, gnl\|bosTau2\|chr3 (31157952-31158124)
	1-174, gnl\|canFam2\|chr6 (45681078-45680863)
	1-174, gnl\|danRer3\|chr8 (15953818-15954029)
	1-174, gnl\|dasNov1\|scaffold_24630 (49523-49737)
	1-174, gnl\|echTel1\|scaffold_319338 (147407-147192)
	1-174, gnl\|fr1\|chrUn (21474521-21474306)
	1-174, gnl\|galGal2\|chr1 (3125154-3124940)
	1-174, gnl\|hg17\|chr1 (109447328-109447543)
	1-174, gnl\|Hg17\|chr1 (109447366-109447538)
	1-174, gnl\|loxAfr1\|scaffold_1838 (39976-40191)
	1-174, gnl\|mm7\|chr3 (108286253-108286043)
	1-174, gnl\|Mm7\|chr3 (108286213-108286042)
	1-174, gnl\|monDom2\|scaffold_0 (7497697-7497481)
	1-174, gnl\|oryCun1\|scaffold_209665 (32498-32713)
	1-174, gnl\|panTro1\|chr1 (108370599-108370814)
	1-174, gnl\|rheMac2\|chr1 (112241432-112241649)
	1-174, gnl\|rn3\|chr2 (203994382-203994167)
	1-174, gnl\|tetNig1\|chr9 (3194294-3194081)
	1-174, gnl\|xenTro1\|scaffold_566 (801768-801973)