Non-Coding RNA Search

rcsk04_g18.y1

Sequence:


               
               TTCTCCATTCCAGTGGGAACCTGGATGGAAACCCTCTTTTTGGAAGCCAAGAAGGCAAAG
TTCCATTTTTTTCTTGGCAAGACACTTTATGAGACTCTGAGTGTCTTTGGACCCTGCATT
TTGGTAGCTTGGAATGAGCCTGAGAACACTTTCATGCCCCAGTGATTTCAGAAACTCTCC
CCTAAAACAAAGACTCCAGTTGGCAGCATTCAATCTCATTTCTCAAGGCCAAGGAAAGTG
CGTGTTTGCATCCATCCCAAGTCCTCTTTCACTTGTCCCTCACACCCTGATGTTGACTAT
AACAAGACGATTTAGAGGTTCAGGAAAGATCTCCCTATCCAATTAGTATTTTTCTGAAAA
AGGGCAGCTGCCACTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTCCATTCCAGTGGGAACCTGGATGGAAACCCTCTTTTTGGAAGCCAAGAAGGCAAAG
TTCCATTTTTTTCTTGGCAAGACACTTTATGAGACTCTGAGTGTCTTTGGACCCTGCATT
TTGGTAGCTTGGAATGAGCCTGAGAACACTTTCATGCCCCAGTGATTTCAGAAACTCTCC
CCTAAAACAAAGACTCCAGTTGGCAGCATTCAATCTCATTTCTCAAGGCCAAGGAAAGTG
CGTGTTTGCATCCATCCCAAGTCCTCTTTCACTTGTCCCTCACACCCTGATGTTGACTAT
AACAAGACGATTTAGAGGTTCAGGAAAGATCTCCCTATCCAATTAGTATTTTTCTGAAAA
AGGGCAGCTGCCACTAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-114, + strand, RNAz p=0.917706

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-114, + strand, RNAz p=0.917706

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-295, gnl|bosTau2|chr9 (49606207-49606502)
               

               
               1-295, gnl|canFam2|chr1 (42235797-42236279)
               

               
               1-295, gnl|dasNov1|scaffold_298885 (667-228)
               

               
               1-295, gnl|echTel1|scaffold_313650 (38530-38012)
               

               
               1-295, gnl|hg17|chr6 (148605021-148605509)
               

               
               1-295, gnl|Hg17|chr6 (148605117-148605412)
               

               
               1-295, gnl|mm7|chr10 (8670458-8669968)
               

               
               1-295, gnl|Mm7|chr10 (8670359-8670060)
               

               
               1-295, gnl|oryCun1|scaffold_192515 (104061-104607)
               

               
               1-295, gnl|panTro1|chr5 (152042705-152043193)
               

               
               1-295, gnl|rheMac2|chr4 (115075973-115075488)
               

               
               1-295, gnl|rn3|chr1 (3587199-3586692)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-295, gnl|bosTau2|chr9 (49606207-49606502)
               

               
               1-295, gnl|canFam2|chr1 (42235797-42236279)
               

               
               1-295, gnl|dasNov1|scaffold_298885 (667-228)
               

               
               1-295, gnl|echTel1|scaffold_313650 (38530-38012)
               

               
               1-295, gnl|hg17|chr6 (148605021-148605509)
               

               
               1-295, gnl|Hg17|chr6 (148605117-148605412)
               

               
               1-295, gnl|mm7|chr10 (8670458-8669968)
               

               
               1-295, gnl|Mm7|chr10 (8670359-8670060)
               

               
               1-295, gnl|oryCun1|scaffold_192515 (104061-104607)
               

               
               1-295, gnl|panTro1|chr5 (152042705-152043193)
               

               
               1-295, gnl|rheMac2|chr4 (115075973-115075488)
               

               
               1-295, gnl|rn3|chr1 (3587199-3586692)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	1-295, gnl\|bosTau2\|chr9 (49606207-49606502)
	1-295, gnl\|canFam2\|chr1 (42235797-42236279)
	1-295, gnl\|dasNov1\|scaffold_298885 (667-228)
	1-295, gnl\|echTel1\|scaffold_313650 (38530-38012)
	1-295, gnl\|hg17\|chr6 (148605021-148605509)
	1-295, gnl\|Hg17\|chr6 (148605117-148605412)
	1-295, gnl\|mm7\|chr10 (8670458-8669968)
	1-295, gnl\|Mm7\|chr10 (8670359-8670060)
	1-295, gnl\|oryCun1\|scaffold_192515 (104061-104607)
	1-295, gnl\|panTro1\|chr5 (152042705-152043193)
	1-295, gnl\|rheMac2\|chr4 (115075973-115075488)
	1-295, gnl\|rn3\|chr1 (3587199-3586692)