Non-Coding RNA Search

rcsk04_i24.y1

Sequence:


               
               GTATCAAATTCTTGACCTTGGCACTCTGCTTTGGTTTTCTGAGTTGCCTGAGATCATGTA
TGCCCCAGTTGTAGGGCTAAAGCCTAAGGATAATTTTAGCCTGTAAATTTGCTGTTACAA
ACTCTCAGTGCTAGCCATTCTTGTCTGAACCACACTTGACTGTCCCTGTTATCTTATGTA
GGTTGCTATTGCTGGGGCCCCAGTCACTCTGTGGATCTTCTATGATACAGGCTATACGGA
GCGTTATATGGGTCACCCTGACCAGAATGAACAGGGCTATTACTTAGGATCTGTGGCCAT
GCAAGCAGAGAAGTTCCCCTCTGAACCAAATCGTTTACTACTCTTACATGGGTTCTTAGA
TGAGAATGTCCATTTTGCACACACCAGTATATTACTGAGTTTTTTAGTGAGGGCTGGAAA
GCCTTATGATTTACAGGTGAGTTCTTTTACATTTTCTGATTAAAACAGTTGTGATTAGTG
ATTGATTATTTTGAAGTATAATAAACTATGAAGTAAGGTTGAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATCAAATTCTTGACCTTGGCACTCTGCTTTGGTTTTCTGAGTTGCCTGAGATCATGTA
TGCCCCAGTTGTAGGGCTAAAGCCTAAGGATAATTTTAGCCTGTAAATTTGCTGTTACAA
ACTCTCAGTGCTAGCCATTCTTGTCTGAACCACACTTGACTGTCCCTGTTATCTTATGTA
GGTTGCTATTGCTGGGGCCCCAGTCACTCTGTGGATCTTCTATGATACAGGCTATACGGA
GCGTTATATGGGTCACCCTGACCAGAATGAACAGGGCTATTACTTAGGATCTGTGGCCAT
GCAAGCAGAGAAGTTCCCCTCTGAACCAAATCGTTTACTACTCTTACATGGGTTCTTAGA
TGAGAATGTCCATTTTGCACACACCAGTATATTACTGAGTTTTTTAGTGAGGGCTGGAAA
GCCTTATGATTTACAGGTGAGTTCTTTTACATTTTCTGATTAAAACAGTTGTGATTAGTG
ATTGATTATTTTGAAGTATAATAAACTATGAAGTAAGGTTGAATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865608|ref|XP_616743.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865608|ref|XP_616743.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-324, gnl|bosTau2|chr10 (8823264-8822950)
               

               
               1-324, gnl|Hg17|chr15 (63531675-63531351)
               

               
               1-324, gnl|Mm7|chr9 (65107427-65107746)
               


               
               325-526, gnl|bosTau2|chr10 (8821980-8821780)
               

               
               325-526, gnl|Hg17|chr15 (63530501-63530300)
               

               
               325-526, gnl|Mm7|chr9 (65108315-65108517)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-324, gnl|bosTau2|chr10 (8823264-8822950)
               

               
               1-324, gnl|Hg17|chr15 (63531675-63531351)
               

               
               1-324, gnl|Mm7|chr9 (65107427-65107746)
               


               
               325-526, gnl|bosTau2|chr10 (8821980-8821780)
               

               
               325-526, gnl|Hg17|chr15 (63530501-63530300)
               

               
               325-526, gnl|Mm7|chr9 (65108315-65108517)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	1-324, gnl\|bosTau2\|chr10 (8823264-8822950)
	1-324, gnl\|Hg17\|chr15 (63531675-63531351)
	1-324, gnl\|Mm7\|chr9 (65107427-65107746)

	325-526, gnl\|bosTau2\|chr10 (8821980-8821780)
	325-526, gnl\|Hg17\|chr15 (63530501-63530300)
	325-526, gnl\|Mm7\|chr9 (65108315-65108517)