rcsk06_k10.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTTCCTATCACGTGTCTGGAACTGGGACTCGCAGAATTTCTACAGAAGGGTCTGCAAA GCAGCTACCAAATGCTTACTTTCTGCTTCCACAAGTCCAGAGTGTTCAGCTTTCGCAAAC ACAGGCAGAAACCACTAATACTAGCCTCCTGCAGGTGCAACTGGAATGCAGTTTACATAA TAAAGTGTGTCAGCAATTAAAGAGTTGTTACGTGGAATCAGATGATGTTTTACGGCTACA AATGAGCATAATAGTGACAATGGAAAACACCTCGAAAGAATTTGAAGAAAACACACAAGA TTTGTTAGATCATCTCTCTATTATTTACGTGGCTACAGATAAATCTGAGACCTCGGATGA GTTCGGCCGTGAACATGTATATACTGCATTCTGGAAACAGCCTTCTGTGGATACAGGACG TCCACCATTTCTCACAGAGAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTTCCTATCACGTGTCTGGAACTGGGACTCGCAGAATTTCTACAGAAGGGTCTGCAAA GCAGCTACCAAATGCTTACTTTCTGCTTCCACAAGTCCAGAGTGTTCAGCTTTCGCAAAC ACAGGCAGAAACCACTAATACTAGCCTCCTGCAGGTGCAACTGGAATGCAGTTTACATAA TAAAGTGTGTCAGCAATTAAAGAGTTGTTACGTGGAATCAGATGATGTTTTACGGCTACA AATGAGCATAATAGTGACAATGGAAAACACCTCGAAAGAATTTGAAGAAAACACACAAGA TTTGTTAGATCATCTCTCTATTATTTACGTGGCTACAGATAAATCTGAGACCTCGGATGA GTTCGGCCGTGAACATGTATATACTGCATTCTGGAAACAGCCTTCTGTGGATACAGGACG TCCACCATTTCTCACAGAGAAC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 11-125, - strand, RNAz p=0.771058 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 11-125, - strand, RNAz p=0.771058 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 11-125, gnl|bosTau2|chr17 (3052717-3052603) | |
| 11-125, gnl|canFam2|chr15 (54376148-54376277) | |
| 11-125, gnl|dasNov1|scaffold_84770 (819-696) | |
| 11-125, gnl|echTel1|scaffold_312071 (8068-8196) | |
| 11-125, gnl|galGal2|chr4 (20575235-20575364) | |
| 11-125, gnl|hg17|chr4 (154837005-154837134) | |
| 11-125, gnl|Hg17|chr4 (154837012-154837126) | |
| 11-125, gnl|mm7|chr3 (84074014-84073885) | |
| 11-125, gnl|Mm7|chr3 (84074005-84073891) | |
| 11-125, gnl|monDom2|scaffold_9 (23887586-23887715) | |
| 11-125, gnl|oryCun1|scaffold_204051 (4731-4860) | |
| 11-125, gnl|panTro1|chr3 (172168678-172168807) | |
| 11-125, gnl|rheMac2|chr5 (145764993-145765122) | |
| 11-125, gnl|rn3|chr2 (175675148-175675018) | |
| 201-354, gnl|bosTau2|chr17 (3029968-3029815) | |
| 201-354, gnl|canFam2|chr15 (54398004-54398255) | |
| 201-354, gnl|dasNov1|scaffold_33124 (5003-4749) | |
| 201-354, gnl|echTel1|scaffold_287908 (58684-58949) | |
| 201-354, gnl|galGal2|chr4 (20582231-20582479) | |
| 201-354, gnl|hg17|chr4 (154860103-154860345) | |
| 201-354, gnl|Hg17|chr4 (154860162-154860315) | |
| 201-354, gnl|loxAfr1|scaffold_43218 (12805-12558) | |
| 201-354, gnl|mm7|chr3 (84055836-84055567) | |
| 201-354, gnl|Mm7|chr3 (84055747-84055594) | |
| 201-354, gnl|monDom2|scaffold_9 (23894103-23894356) | |
| 201-354, gnl|oryCun1|scaffold_212532 (43618-43853) | |
| 201-354, gnl|panTro1|chr3_random (21167360-21167603) | |
| 201-354, gnl|rheMac2|chr5 (145787271-145787513) | |
| 201-354, gnl|rn3|chr2 (175660612-175660352) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-125, gnl|bosTau2|chr17 (3052717-3052603) | |
| 11-125, gnl|canFam2|chr15 (54376148-54376277) | |
| 11-125, gnl|dasNov1|scaffold_84770 (819-696) | |
| 11-125, gnl|echTel1|scaffold_312071 (8068-8196) | |
| 11-125, gnl|galGal2|chr4 (20575235-20575364) | |
| 11-125, gnl|hg17|chr4 (154837005-154837134) | |
| 11-125, gnl|Hg17|chr4 (154837012-154837126) | |
| 11-125, gnl|mm7|chr3 (84074014-84073885) | |
| 11-125, gnl|Mm7|chr3 (84074005-84073891) | |
| 11-125, gnl|monDom2|scaffold_9 (23887586-23887715) | |
| 11-125, gnl|oryCun1|scaffold_204051 (4731-4860) | |
| 11-125, gnl|panTro1|chr3 (172168678-172168807) | |
| 11-125, gnl|rheMac2|chr5 (145764993-145765122) | |
| 11-125, gnl|rn3|chr2 (175675148-175675018) | |
| 201-354, gnl|bosTau2|chr17 (3029968-3029815) | |
| 201-354, gnl|canFam2|chr15 (54398004-54398255) | |
| 201-354, gnl|dasNov1|scaffold_33124 (5003-4749) | |
| 201-354, gnl|echTel1|scaffold_287908 (58684-58949) | |
| 201-354, gnl|galGal2|chr4 (20582231-20582479) | |
| 201-354, gnl|hg17|chr4 (154860103-154860345) | |
| 201-354, gnl|Hg17|chr4 (154860162-154860315) | |
| 201-354, gnl|loxAfr1|scaffold_43218 (12805-12558) | |
| 201-354, gnl|mm7|chr3 (84055836-84055567) | |
| 201-354, gnl|Mm7|chr3 (84055747-84055594) | |
| 201-354, gnl|monDom2|scaffold_9 (23894103-23894356) | |
| 201-354, gnl|oryCun1|scaffold_212532 (43618-43853) | |
| 201-354, gnl|panTro1|chr3_random (21167360-21167603) | |
| 201-354, gnl|rheMac2|chr5 (145787271-145787513) | |
| 201-354, gnl|rn3|chr2 (175660612-175660352) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csk (0.140746) |