Non-Coding RNA Search

rcsk09_c2.y1

Sequence:


               
               AGCAGGTGGTCTGAAAGGCAGAACATGGCTTTTGGAATCAAGGACTGGTCCCTGGTATGC
TTCTGCCACTTGCTGGCTATTTGAACCTGGAAATCTTTTCTGAGCCTCATTTATCTCATT
TGTAAAATGCAAATAATAATATCTGCTTTGCAAATTGTTGTAAGGATTAAAGTATATAAA
AGTCCCTACTAGGGTAAACGTATAGGAAAGTAAATGTCTGGTGCTGGCTTAATAAATACT
GTTACTACAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGGTGGTCTGAAAGGCAGAACATGGCTTTTGGAATCAAGGACTGGTCCCTGGTATGC
TTCTGCCACTTGCTGGCTATTTGAACCTGGAAATCTTTTCTGAGCCTCATTTATCTCATT
TGTAAAATGCAAATAATAATATCTGCTTTGCAAATTGTTGTAAGGATTAAAGTATATAAA
AGTCCCTACTAGGGTAAACGTATAGGAAAGTAAATGTCTGGTGCTGGCTTAATAAATACT
GTTACTACAGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               33-165, - strand, RNAz p=0.778947

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               33-165, - strand, RNAz p=0.778947

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               7-188, gnl|bosTau2|chr3 (31599633-31599817)
               

               
               7-188, gnl|canFam2|chr6 (45912567-45912196)
               

               
               7-188, gnl|dasNov1|scaffold_5453 (75234-74897)
               

               
               7-188, gnl|echTel1|scaffold_309299 (118704-118356)
               

               
               7-188, gnl|hg17|chr1 (109157964-109158324)
               

               
               7-188, gnl|Hg17|chr1 (109158188-109158377)
               

               
               7-188, gnl|loxAfr1|scaffold_41204 (4803-5151)
               

               
               7-188, gnl|mm7|chr3 (108515751-108515492)
               

               
               7-188, gnl|monDom2|scaffold_0 (7805087-7804688)
               

               
               7-188, gnl|oryCun1|scaffold_213145 (11414-11093)
               

               
               7-188, gnl|panTro1|chr1 (108085940-108086300)
               

               
               7-188, gnl|rheMac2|chr1 (111918147-111918510)
               

               
               7-188, gnl|rn3|chr2 (204265803-204265537)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-188, gnl|bosTau2|chr3 (31599633-31599817)
               

               
               7-188, gnl|canFam2|chr6 (45912567-45912196)
               

               
               7-188, gnl|dasNov1|scaffold_5453 (75234-74897)
               

               
               7-188, gnl|echTel1|scaffold_309299 (118704-118356)
               

               
               7-188, gnl|hg17|chr1 (109157964-109158324)
               

               
               7-188, gnl|Hg17|chr1 (109158188-109158377)
               

               
               7-188, gnl|loxAfr1|scaffold_41204 (4803-5151)
               

               
               7-188, gnl|mm7|chr3 (108515751-108515492)
               

               
               7-188, gnl|monDom2|scaffold_0 (7805087-7804688)
               

               
               7-188, gnl|oryCun1|scaffold_213145 (11414-11093)
               

               
               7-188, gnl|panTro1|chr1 (108085940-108086300)
               

               
               7-188, gnl|rheMac2|chr1 (111918147-111918510)
               

               
               7-188, gnl|rn3|chr2 (204265803-204265537)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	7-188, gnl\|bosTau2\|chr3 (31599633-31599817)
	7-188, gnl\|canFam2\|chr6 (45912567-45912196)
	7-188, gnl\|dasNov1\|scaffold_5453 (75234-74897)
	7-188, gnl\|echTel1\|scaffold_309299 (118704-118356)
	7-188, gnl\|hg17\|chr1 (109157964-109158324)
	7-188, gnl\|Hg17\|chr1 (109158188-109158377)
	7-188, gnl\|loxAfr1\|scaffold_41204 (4803-5151)
	7-188, gnl\|mm7\|chr3 (108515751-108515492)
	7-188, gnl\|monDom2\|scaffold_0 (7805087-7804688)
	7-188, gnl\|oryCun1\|scaffold_213145 (11414-11093)
	7-188, gnl\|panTro1\|chr1 (108085940-108086300)
	7-188, gnl\|rheMac2\|chr1 (111918147-111918510)
	7-188, gnl\|rn3\|chr2 (204265803-204265537)