Non-Coding RNA Search

rcsk09_e4.y1

Sequence:


               
               TGCCATTCCACATACAAACACATCCCCACACGCTCTGCCTTGCTCACACACGGAGCCACA
GGCACATGTGAGCACATTCTTTCCTTCCTTCTCACTGTCTCAGCCCTTGACTTCTACAAG
CCCATGGAACATTTCTGGAAAGGCGCTCTTGATCCAGCAGGGTAGGATTGTTTTGATTTC
TCTCTGTAGCTTTAGCATTTTGAGAAAGCAACTTACCTTTCTGGCCAGTGTCTGTATCCT
AGCAGGGAGATGAGGGTTTGCTTTCTCCATGGGTTTACGTGTGCACCTCCTGCTGCTGTC
AGGACTTGTAGGGTTCTTTGTGTAATTTACATATAATTCGACAGGTTCCGATTTTTTAAG
AGCCCTCTGAAGTGCTTTTGCATGGGTTTCAAAAAGATATTTGAAAATTGAAAGTGTGAT
TTACGGAAACGAAGTCAATCTGTGAAAAAATTGCTTGGGAAAGTGATGGTTGCTGGCCAT
AAAGAGAAATATCTGTGATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCATTCCACATACAAACACATCCCCACACGCTCTGCCTTGCTCACACACGGAGCCACA
GGCACATGTGAGCACATTCTTTCCTTCCTTCTCACTGTCTCAGCCCTTGACTTCTACAAG
CCCATGGAACATTTCTGGAAAGGCGCTCTTGATCCAGCAGGGTAGGATTGTTTTGATTTC
TCTCTGTAGCTTTAGCATTTTGAGAAAGCAACTTACCTTTCTGGCCAGTGTCTGTATCCT
AGCAGGGAGATGAGGGTTTGCTTTCTCCATGGGTTTACGTGTGCACCTCCTGCTGCTGTC
AGGACTTGTAGGGTTCTTTGTGTAATTTACATATAATTCGACAGGTTCCGATTTTTTAAG
AGCCCTCTGAAGTGCTTTTGCATGGGTTTCAAAAAGATATTTGAAAATTGAAAGTGTGAT
TTACGGAAACGAAGTCAATCTGTGAAAAAATTGCTTGGGAAAGTGATGGTTGCTGGCCAT
AAAGAGAAATATCTGTGATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-502, gnl|bosTau2|chr9 (52473205-52472691)
               

               
               1-502, gnl|canFam2|chr1 (45127172-45128072)
               

               
               1-502, gnl|dasNov1|scaffold_18883 (38705-39541)
               

               
               1-502, gnl|hg17|chr6 (152218654-152219534)
               

               
               1-502, gnl|Hg17|chr6 (152218907-152219411)
               

               
               1-502, gnl|mm7|chr10 (5636830-5635923)
               

               
               1-502, gnl|Mm7|chr10 (5636592-5636053)
               

               
               1-502, gnl|monDom2|scaffold_0 (53961622-53960753)
               

               
               1-502, gnl|oryCun1|scaffold_209148 (58244-59136)
               

               
               1-502, gnl|panTro1|chr5 (155734218-155735110)
               

               
               1-502, gnl|rheMac2|chr4 (111265336-111264446)
               

               
               1-502, gnl|rn3|chr1 (35526363-35527272)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-502, gnl|bosTau2|chr9 (52473205-52472691)
               

               
               1-502, gnl|canFam2|chr1 (45127172-45128072)
               

               
               1-502, gnl|dasNov1|scaffold_18883 (38705-39541)
               

               
               1-502, gnl|hg17|chr6 (152218654-152219534)
               

               
               1-502, gnl|Hg17|chr6 (152218907-152219411)
               

               
               1-502, gnl|mm7|chr10 (5636830-5635923)
               

               
               1-502, gnl|Mm7|chr10 (5636592-5636053)
               

               
               1-502, gnl|monDom2|scaffold_0 (53961622-53960753)
               

               
               1-502, gnl|oryCun1|scaffold_209148 (58244-59136)
               

               
               1-502, gnl|panTro1|chr5 (155734218-155735110)
               

               
               1-502, gnl|rheMac2|chr4 (111265336-111264446)
               

               
               1-502, gnl|rn3|chr1 (35526363-35527272)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	1-502, gnl\|bosTau2\|chr9 (52473205-52472691)
	1-502, gnl\|canFam2\|chr1 (45127172-45128072)
	1-502, gnl\|dasNov1\|scaffold_18883 (38705-39541)
	1-502, gnl\|hg17\|chr6 (152218654-152219534)
	1-502, gnl\|Hg17\|chr6 (152218907-152219411)
	1-502, gnl\|mm7\|chr10 (5636830-5635923)
	1-502, gnl\|Mm7\|chr10 (5636592-5636053)
	1-502, gnl\|monDom2\|scaffold_0 (53961622-53960753)
	1-502, gnl\|oryCun1\|scaffold_209148 (58244-59136)
	1-502, gnl\|panTro1\|chr5 (155734218-155735110)
	1-502, gnl\|rheMac2\|chr4 (111265336-111264446)
	1-502, gnl\|rn3\|chr1 (35526363-35527272)