Non-Coding RNA Search

rcsk09_k4.y1

Sequence:


               
               GTTTGCCATTTTTTGTGGCAAAGGAGATCATGACAACAAGATCAGGAAGAGGCGCTACTG
AAACAAAACCATGACACACACTTCTCAGGTGAGACTGCCGGCTGATGAACAATGAAAACC
AAGCAGAACCATAGATGTCACAGCCAACCTCTCCTAAGAAACGGAGTTAAGTCCCACCTA
GATGAGCATGTGCAAACAGAGAAACATGTTGTCTTTCCAGAAAAGTGAAAAGATCAGACA
TTCCATTCCCTAGGCAGGCGGGACTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGCCATTTTTTGTGGCAAAGGAGATCATGACAACAAGATCAGGAAGAGGCGCTACTG
AAACAAAACCATGACACACACTTCTCAGGTGAGACTGCCGGCTGATGAACAATGAAAACC
AAGCAGAACCATAGATGTCACAGCCAACCTCTCCTAAGAAACGGAGTTAAGTCCCACCTA
GATGAGCATGTGCAAACAGAGAAACATGTTGTCTTTCCAGAAAAGTGAAAAGATCAGACA
TTCCATTCCCTAGGCAGGCGGGACTGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               153-269, + strand, RNAz p=0.798452

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-269, + strand, RNAz p=0.798452

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               25-269, gnl|bosTau2|chr3 (65273060-65272830)
               

               
               25-269, gnl|canFam2|chr5 (54119143-54118529)
               

               
               25-269, gnl|dasNov1|scaffold_25663 (9437-10020)
               

               
               25-269, gnl|echTel1|scaffold_309677 (170844-170202)
               

               
               25-269, gnl|hg17|chr1 (58761571-58762130)
               

               
               25-269, gnl|Hg17|chr1 (58762198-58761951)
               

               
               25-269, gnl|loxAfr1|scaffold_1819 (122799-122174)
               

               
               25-269, gnl|oryCun1|scaffold_198696 (38542-38062)
               

               
               25-269, gnl|panTro1|chr1 (57094754-57095300)
               

               
               25-269, gnl|rheMac2|chr1 (61437250-61437817)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-269, gnl|bosTau2|chr3 (65273060-65272830)
               

               
               25-269, gnl|canFam2|chr5 (54119143-54118529)
               

               
               25-269, gnl|dasNov1|scaffold_25663 (9437-10020)
               

               
               25-269, gnl|echTel1|scaffold_309677 (170844-170202)
               

               
               25-269, gnl|hg17|chr1 (58761571-58762130)
               

               
               25-269, gnl|Hg17|chr1 (58762198-58761951)
               

               
               25-269, gnl|loxAfr1|scaffold_1819 (122799-122174)
               

               
               25-269, gnl|oryCun1|scaffold_198696 (38542-38062)
               

               
               25-269, gnl|panTro1|chr1 (57094754-57095300)
               

               
               25-269, gnl|rheMac2|chr1 (61437250-61437817)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	25-269, gnl\|bosTau2\|chr3 (65273060-65272830)
	25-269, gnl\|canFam2\|chr5 (54119143-54118529)
	25-269, gnl\|dasNov1\|scaffold_25663 (9437-10020)
	25-269, gnl\|echTel1\|scaffold_309677 (170844-170202)
	25-269, gnl\|hg17\|chr1 (58761571-58762130)
	25-269, gnl\|Hg17\|chr1 (58762198-58761951)
	25-269, gnl\|loxAfr1\|scaffold_1819 (122799-122174)
	25-269, gnl\|oryCun1\|scaffold_198696 (38542-38062)
	25-269, gnl\|panTro1\|chr1 (57094754-57095300)
	25-269, gnl\|rheMac2\|chr1 (61437250-61437817)