Non-Coding RNA Search

rcsk12_a11.y1

Sequence:


               
               AGGTGGAGTTTTAAAATCTGTGGAGGAATTGAAAAATTCCAGTGAAAATGTTGCTAGCAA
TAAATCAGCTCATGAAGAACAGGACTTTATGATACAAACCAAGGTTCCTGATATATATGA
GTTTCTTAAAGATGCTTCAGGTAAAGTGGGTCCCAGTACTGGAGTGGCCGAAGAATGTTA
TAAGTTGCATCAAGCATGGCAACCCAAAGTGCCTGAAAACATTGAAGAATTGCCTCCAGT
GGAAGAAGTTCCACATTCTGTCCCAGATCATCTTCCAAACACATATATAGACCTCACAAA
AGATCCAGTCACTGAGACCAAAAACTTGGGGGAATTAATAGAAGTAACAGTTTTAAATAT
TGGTCAGTTGGGATGTTCTGGAAGCAGTGTGGATCAGAATGCTCCAACATTAGACAGTAT
GCAGCCTGAAACTGTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGGAGTTTTAAAATCTGTGGAGGAATTGAAAAATTCCAGTGAAAATGTTGCTAGCAA
TAAATCAGCTCATGAAGAACAGGACTTTATGATACAAACCAAGGTTCCTGATATATATGA
GTTTCTTAAAGATGCTTCAGGTAAAGTGGGTCCCAGTACTGGAGTGGCCGAAGAATGTTA
TAAGTTGCATCAAGCATGGCAACCCAAAGTGCCTGAAAACATTGAAGAATTGCCTCCAGT
GGAAGAAGTTCCACATTCTGTCCCAGATCATCTTCCAAACACATATATAGACCTCACAAA
AGATCCAGTCACTGAGACCAAAAACTTGGGGGAATTAATAGAAGTAACAGTTTTAAATAT
TGGTCAGTTGGGATGTTCTGGAAGCAGTGTGGATCAGAATGCTCCAACATTAGACAGTAT
GCAGCCTGAAACTGTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               205-324, - strand, RNAz p=0.616779

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-324, - strand, RNAz p=0.616779

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               6-435, gnl|bosTau2|chr9 (33191975-33191549)
               

               
               6-435, gnl|canFam2|chr12 (52073222-52073760)
               

               
               6-435, gnl|dasNov1|scaffold_61887 (1291-750)
               

               
               6-435, gnl|galGal2|chr3 (73771514-73770953)
               

               
               6-435, gnl|hg17|chr6 (90634485-90635029)
               

               
               6-435, gnl|Hg17|chr6 (90634499-90634931)
               

               
               6-435, gnl|loxAfr1|scaffold_13069 (34961-35505)
               

               
               6-435, gnl|mm7|chr4 (32924025-32924569)
               

               
               6-435, gnl|Mm7|chr4 (32924039-32924471)
               

               
               6-435, gnl|monDom2|scaffold_0 (138345877-138345350)
               

               
               6-435, gnl|oryCun1|scaffold_200101 (19063-18521)
               

               
               6-435, gnl|panTro1|chr5 (92349920-92350465)
               

               
               6-435, gnl|rheMac2|chr4 (85750975-85751519)
               

               
               6-435, gnl|rn3|chr5 (48948908-48949449)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-435, gnl|bosTau2|chr9 (33191975-33191549)
               

               
               6-435, gnl|canFam2|chr12 (52073222-52073760)
               

               
               6-435, gnl|dasNov1|scaffold_61887 (1291-750)
               

               
               6-435, gnl|galGal2|chr3 (73771514-73770953)
               

               
               6-435, gnl|hg17|chr6 (90634485-90635029)
               

               
               6-435, gnl|Hg17|chr6 (90634499-90634931)
               

               
               6-435, gnl|loxAfr1|scaffold_13069 (34961-35505)
               

               
               6-435, gnl|mm7|chr4 (32924025-32924569)
               

               
               6-435, gnl|Mm7|chr4 (32924039-32924471)
               

               
               6-435, gnl|monDom2|scaffold_0 (138345877-138345350)
               

               
               6-435, gnl|oryCun1|scaffold_200101 (19063-18521)
               

               
               6-435, gnl|panTro1|chr5 (92349920-92350465)
               

               
               6-435, gnl|rheMac2|chr4 (85750975-85751519)
               

               
               6-435, gnl|rn3|chr5 (48948908-48949449)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	6-435, gnl\|bosTau2\|chr9 (33191975-33191549)
	6-435, gnl\|canFam2\|chr12 (52073222-52073760)
	6-435, gnl\|dasNov1\|scaffold_61887 (1291-750)
	6-435, gnl\|galGal2\|chr3 (73771514-73770953)
	6-435, gnl\|hg17\|chr6 (90634485-90635029)
	6-435, gnl\|Hg17\|chr6 (90634499-90634931)
	6-435, gnl\|loxAfr1\|scaffold_13069 (34961-35505)
	6-435, gnl\|mm7\|chr4 (32924025-32924569)
	6-435, gnl\|Mm7\|chr4 (32924039-32924471)
	6-435, gnl\|monDom2\|scaffold_0 (138345877-138345350)
	6-435, gnl\|oryCun1\|scaffold_200101 (19063-18521)
	6-435, gnl\|panTro1\|chr5 (92349920-92350465)
	6-435, gnl\|rheMac2\|chr4 (85750975-85751519)
	6-435, gnl\|rn3\|chr5 (48948908-48949449)