Non-Coding RNA Search

rcsk13_n3.y1

Sequence:


               
               AATAGAGTTAATGAAAACAAAATCTAACTTAAATGACTTATCTTTACTCTGAAAGACCCA
AGAGAAAAGCATACAGTTAAAAATGTTACCCTTTGGGCTAATTGACTATTGTAATACTGT
TCAACAGTGCAAGACACAAGTATGTCAACAAATTGGAGAAAGCAACTACTTGAAAGAGGG
TAATTTTTATTGATAGAGGTTGTGTTCTCTGAAGAAACATAAAGGAGGGTGAGATAGTGA
TGGTGCCAGCAACACTTGAAGAAATTACTTTTTAAGTTGTGAAGTATTTTTCTGAGGCTT
TGTCAAAAATTTCTGCTCCAATTCCATTTCAATATTTGTTTTACATATCTCCGAATACAT
AAGGAGAATTCTTAAAATCTGGAATTTATAATCTGGTTGGGAAGACGAAGTGTAATAGTA
CAAAGAAATTAAGGGACATTAGAAAACAATATCTTCTCAAGTGTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAGAGTTAATGAAAACAAAATCTAACTTAAATGACTTATCTTTACTCTGAAAGACCCA
AGAGAAAAGCATACAGTTAAAAATGTTACCCTTTGGGCTAATTGACTATTGTAATACTGT
TCAACAGTGCAAGACACAAGTATGTCAACAAATTGGAGAAAGCAACTACTTGAAAGAGGG
TAATTTTTATTGATAGAGGTTGTGTTCTCTGAAGAAACATAAAGGAGGGTGAGATAGTGA
TGGTGCCAGCAACACTTGAAGAAATTACTTTTTAAGTTGTGAAGTATTTTTCTGAGGCTT
TGTCAAAAATTTCTGCTCCAATTCCATTTCAATATTTGTTTTACATATCTCCGAATACAT
AAGGAGAATTCTTAAAATCTGGAATTTATAATCTGGTTGGGAAGACGAAGTGTAATAGTA
CAAAGAAATTAAGGGACATTAGAAAACAATATCTTCTCAAGTGTTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-199, - strand, RNAz p=0.808574

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-199, - strand, RNAz p=0.808574

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               5-220, gnl|bosTau2|chr1 (77965385-77965171)
               

               
               5-220, gnl|canFam2|chr23 (44209813-44210294)
               

               
               5-220, gnl|hg17|chr3 (147110701-147111173)
               

               
               5-220, gnl|Hg17|chr3 (147110966-147111172)
               

               
               5-220, gnl|loxAfr1|scaffold_5641 (80695-81166)
               

               
               5-220, gnl|oryCun1|scaffold_147548 (10222-10697)
               

               
               5-220, gnl|panTro1|chr2 (149898143-149898615)
               

               
               5-220, gnl|rheMac2|chr2 (141860727-141860254)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-220, gnl|bosTau2|chr1 (77965385-77965171)
               

               
               5-220, gnl|canFam2|chr23 (44209813-44210294)
               

               
               5-220, gnl|hg17|chr3 (147110701-147111173)
               

               
               5-220, gnl|Hg17|chr3 (147110966-147111172)
               

               
               5-220, gnl|loxAfr1|scaffold_5641 (80695-81166)
               

               
               5-220, gnl|oryCun1|scaffold_147548 (10222-10697)
               

               
               5-220, gnl|panTro1|chr2 (149898143-149898615)
               

               
               5-220, gnl|rheMac2|chr2 (141860727-141860254)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	5-220, gnl\|bosTau2\|chr1 (77965385-77965171)
	5-220, gnl\|canFam2\|chr23 (44209813-44210294)
	5-220, gnl\|hg17\|chr3 (147110701-147111173)
	5-220, gnl\|Hg17\|chr3 (147110966-147111172)
	5-220, gnl\|loxAfr1\|scaffold_5641 (80695-81166)
	5-220, gnl\|oryCun1\|scaffold_147548 (10222-10697)
	5-220, gnl\|panTro1\|chr2 (149898143-149898615)
	5-220, gnl\|rheMac2\|chr2 (141860727-141860254)