Non-Coding RNA Search

rcsk16_d17.y1

Sequence:


               
               AATCACAGCTTTCCCTTCTGGTGATCTGCTTTATGATACAATTTCCAGGAATGCATTGTG
TCTAAAATTGGGGACCATATGTACAGGAAATTCTTTCTTATGTCAATGTGAAATCCCTCC
AAAGTAAAATCCCTCGTCATAGTTGTGTGGTATGGGGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCACAGCTTTCCCTTCTGGTGATCTGCTTTATGATACAATTTCCAGGAATGCATTGTG
TCTAAAATTGGGGACCATATGTACAGGAAATTCTTTCTTATGTCAATGTGAAATCCCTCC
AAAGTAAAATCCCTCGTCATAGTTGTGTGGTATGGGGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGAAAA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-154, gnl|bosTau2|chr1 (48937231-48937385)
               

               
               1-154, gnl|canFam2|chr34 (24100690-24101235)
               

               
               1-154, gnl|dasNov1|scaffold_5673 (11626-12138)
               

               
               1-154, gnl|echTel1|scaffold_283843 (32495-32967)
               

               
               1-154, gnl|hg17|chr3 (190023255-190023741)
               

               
               1-154, gnl|Hg17|chr3 (190023254-190023405)
               

               
               1-154, gnl|loxAfr1|scaffold_13814 (3668-4136)
               

               
               1-154, gnl|mm7|chr16 (24598342-24598830)
               

               
               1-154, gnl|Mm7|chr16 (24598342-24598497)
               

               
               1-154, gnl|oryCun1|scaffold_203821 (41410-41887)
               

               
               1-154, gnl|panTro1|chr2 (194107893-194108379)
               

               
               1-154, gnl|rheMac2|chr2 (181151092-181151587)
               

               
               1-154, gnl|rn3|chr11 (78062562-78062112)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr1 (48937231-48937385)
               

               
               1-154, gnl|canFam2|chr34 (24100690-24101235)
               

               
               1-154, gnl|dasNov1|scaffold_5673 (11626-12138)
               

               
               1-154, gnl|echTel1|scaffold_283843 (32495-32967)
               

               
               1-154, gnl|hg17|chr3 (190023255-190023741)
               

               
               1-154, gnl|Hg17|chr3 (190023254-190023405)
               

               
               1-154, gnl|loxAfr1|scaffold_13814 (3668-4136)
               

               
               1-154, gnl|mm7|chr16 (24598342-24598830)
               

               
               1-154, gnl|Mm7|chr16 (24598342-24598497)
               

               
               1-154, gnl|oryCun1|scaffold_203821 (41410-41887)
               

               
               1-154, gnl|panTro1|chr2 (194107893-194108379)
               

               
               1-154, gnl|rheMac2|chr2 (181151092-181151587)
               

               
               1-154, gnl|rn3|chr11 (78062562-78062112)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	1-154, gnl\|bosTau2\|chr1 (48937231-48937385)
	1-154, gnl\|canFam2\|chr34 (24100690-24101235)
	1-154, gnl\|dasNov1\|scaffold_5673 (11626-12138)
	1-154, gnl\|echTel1\|scaffold_283843 (32495-32967)
	1-154, gnl\|hg17\|chr3 (190023255-190023741)
	1-154, gnl\|Hg17\|chr3 (190023254-190023405)
	1-154, gnl\|loxAfr1\|scaffold_13814 (3668-4136)
	1-154, gnl\|mm7\|chr16 (24598342-24598830)
	1-154, gnl\|Mm7\|chr16 (24598342-24598497)
	1-154, gnl\|oryCun1\|scaffold_203821 (41410-41887)
	1-154, gnl\|panTro1\|chr2 (194107893-194108379)
	1-154, gnl\|rheMac2\|chr2 (181151092-181151587)
	1-154, gnl\|rn3\|chr11 (78062562-78062112)