Non-Coding RNA Search

rcsk18_o24.y1

Sequence:


               
               CACACCTGGTTTTGCCAAGTGAAGTTTTTCACATTCCCGGATTCCTTGAGATTCCACTGT
CCTGTTCAGTTTGGAATGAAATGTAAATTAGGCACTGTTACAGGGATTAGTTTTCAAGAC
TTTGGAAAGTGAAATGCTGTGTTCTTGGTAAACTGGACTTTCTACTTCCTGTACTGAAAT
ACCAGGAGCACACTGCTCGCTTTATGCGGAGTTCCCAGTGGTGACAGCTTAACACCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACCTGGTTTTGCCAAGTGAAGTTTTTCACATTCCCGGATTCCTTGAGATTCCACTGT
CCTGTTCAGTTTGGAATGAAATGTAAATTAGGCACTGTTACAGGGATTAGTTTTCAAGAC
TTTGGAAAGTGAAATGCTGTGTTCTTGGTAAACTGGACTTTCTACTTCCTGTACTGAAAT
ACCAGGAGCACACTGCTCGCTTTATGCGGAGTTCCCAGTGGTGACAGCTTAACACCTCCT

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-240, gnl|bosTau2|chr13 (28604294-28604534)
               

               
               1-240, gnl|canFam2|chr24 (5677900-5677085)
               

               
               1-240, gnl|dasNov1|scaffold_7243 (26435-25679)
               

               
               1-240, gnl|hg17|chr20 (20639289-20640121)
               

               
               1-240, gnl|Hg17|chr20 (20639818-20639553)
               

               
               1-240, gnl|loxAfr1|scaffold_17501 (38490-39312)
               

               
               1-240, gnl|mm7|chr2 (146250821-146251667)
               

               
               1-240, gnl|Mm7|chr2 (146251311-146251082)
               

               
               1-240, gnl|monDom2|scaffold_1 (56208223-56209120)
               

               
               1-240, gnl|oryCun1|scaffold_123251 (5783-5009)
               

               
               1-240, gnl|panTro1|chr21 (20554535-20555362)
               

               
               1-240, gnl|rheMac2|chr10 (54005565-54006382)
               

               
               1-240, gnl|rn3|chr3 (135049142-135050018)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr13 (28604294-28604534)
               

               
               1-240, gnl|canFam2|chr24 (5677900-5677085)
               

               
               1-240, gnl|dasNov1|scaffold_7243 (26435-25679)
               

               
               1-240, gnl|hg17|chr20 (20639289-20640121)
               

               
               1-240, gnl|Hg17|chr20 (20639818-20639553)
               

               
               1-240, gnl|loxAfr1|scaffold_17501 (38490-39312)
               

               
               1-240, gnl|mm7|chr2 (146250821-146251667)
               

               
               1-240, gnl|Mm7|chr2 (146251311-146251082)
               

               
               1-240, gnl|monDom2|scaffold_1 (56208223-56209120)
               

               
               1-240, gnl|oryCun1|scaffold_123251 (5783-5009)
               

               
               1-240, gnl|panTro1|chr21 (20554535-20555362)
               

               
               1-240, gnl|rheMac2|chr10 (54005565-54006382)
               

               
               1-240, gnl|rn3|chr3 (135049142-135050018)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	1-240, gnl\|bosTau2\|chr13 (28604294-28604534)
	1-240, gnl\|canFam2\|chr24 (5677900-5677085)
	1-240, gnl\|dasNov1\|scaffold_7243 (26435-25679)
	1-240, gnl\|hg17\|chr20 (20639289-20640121)
	1-240, gnl\|Hg17\|chr20 (20639818-20639553)
	1-240, gnl\|loxAfr1\|scaffold_17501 (38490-39312)
	1-240, gnl\|mm7\|chr2 (146250821-146251667)
	1-240, gnl\|Mm7\|chr2 (146251311-146251082)
	1-240, gnl\|monDom2\|scaffold_1 (56208223-56209120)
	1-240, gnl\|oryCun1\|scaffold_123251 (5783-5009)
	1-240, gnl\|panTro1\|chr21 (20554535-20555362)
	1-240, gnl\|rheMac2\|chr10 (54005565-54006382)
	1-240, gnl\|rn3\|chr3 (135049142-135050018)