Non-Coding RNA Search

rcsk29_i19.y1

Sequence:


               
               ATTTATTTTAAAACATGGAAAGTCAGGAGCTCTAGAACGTGAAGATGATTTAAGATTTCA
GCTTTTCTGTGTACTCGTATTTGAGCACTCTCATTTTGTCCTAAAGGGCGTTATACATTG
AAGCAGTAATGCTGAGAAGTGTAGCTCGGAGTATCTGAATGTTGAACGTGGTGCCAGAAT
CTGTTTAGGGCTACGTTTCGGAATCTTAACCTCATATCGGTTGCATGAAATTAAATAGTT
ATGGTTACCACTTCACTAACAGTGATGTAATTTTAATTTTCAGGAGGCTTGGCAAGACAG
TACATCTTCATACTGAGTTAGCCACAGCGTCTCACGTGCACAGATGCTCCTATAGAGACT
GCCCAGTTAGGAGGGTAGAGTGATTACTCATTTTGCAAGATTGTCCTCTCTGTCCAAATT
GGCACTGATAGTGCTCACCTATCAGCACTTTGAGACGAGCAGATTTCCAGTCATTAGGGT
GTTAAAAAACAAAAACCCCATCATAGCCAGACAGGTTTCCTGTGAGTATAAACAGCAACT
AGCTCATCCATTGAAATGGTGTAGGTAAGGCTCTAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATTTTAAAACATGGAAAGTCAGGAGCTCTAGAACGTGAAGATGATTTAAGATTTCA
GCTTTTCTGTGTACTCGTATTTGAGCACTCTCATTTTGTCCTAAAGGGCGTTATACATTG
AAGCAGTAATGCTGAGAAGTGTAGCTCGGAGTATCTGAATGTTGAACGTGGTGCCAGAAT
CTGTTTAGGGCTACGTTTCGGAATCTTAACCTCATATCGGTTGCATGAAATTAAATAGTT
ATGGTTACCACTTCACTAACAGTGATGTAATTTTAATTTTCAGGAGGCTTGGCAAGACAG
TACATCTTCATACTGAGTTAGCCACAGCGTCTCACGTGCACAGATGCTCCTATAGAGACT
GCCCAGTTAGGAGGGTAGAGTGATTACTCATTTTGCAAGATTGTCCTCTCTGTCCAAATT
GGCACTGATAGTGCTCACCTATCAGCACTTTGAGACGAGCAGATTTCCAGTCATTAGGGT
GTTAAAAAACAAAAACCCCATCATAGCCAGACAGGTTTCCTGTGAGTATAAACAGCAACT
AGCTCATCCATTGAAATGGTGTAGGTAAGGCTCTAGAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               411-517, - strand, RNAz p=0.852944

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               411-517, - strand, RNAz p=0.852944

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-581, gnl|bosTau2|chr27 (12082576-12081971)
               

               
               1-581, gnl|Hg17|chr7 (139876035-139875448)
               

               
               1-581, gnl|Mm7|chr6 (39536890-39536300)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-581, gnl|bosTau2|chr27 (12082576-12081971)
               

               
               1-581, gnl|Hg17|chr7 (139876035-139875448)
               

               
               1-581, gnl|Mm7|chr6 (39536890-39536300)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	1-581, gnl\|bosTau2\|chr27 (12082576-12081971)
	1-581, gnl\|Hg17\|chr7 (139876035-139875448)
	1-581, gnl\|Mm7\|chr6 (39536890-39536300)