Non-Coding RNA Search

rcsk29_n1.y1

Sequence:


               
               CTGCAATTACTCTATGGTCTTTGATGGCTGTGCCACATGACAGCACTCTGGCACCTTTCC
TCATTGGCATGGACTTCCTCATGGACCGCTGCTTCATGGATGACAGCTTCATTGCTTTGG
GTAGGGATTGAGATAGTCAAGGGACAGTTTTTAGTACAGCTCTTAACGTCAGGCAACTTA
ACTTTAAAAAATCCTTTGTGAAAATCCTGGTAACAGTACTATATCTCTGATTGTAGGATG
ATTAAATGTTCAGTGTTGGCCTATCTCACCAGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAATTACTCTATGGTCTTTGATGGCTGTGCCACATGACAGCACTCTGGCACCTTTCC
TCATTGGCATGGACTTCCTCATGGACCGCTGCTTCATGGATGACAGCTTCATTGCTTTGG
GTAGGGATTGAGATAGTCAAGGGACAGTTTTTAGTACAGCTCTTAACGTCAGGCAACTTA
ACTTTAAAAAATCCTTTGTGAAAATCCTGGTAACAGTACTATATCTCTGATTGTAGGATG
ATTAAATGTTCAGTGTTGGCCTATCTCACCAGAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               177-269, - strand, RNAz p=0.953576

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               177-269, - strand, RNAz p=0.953576

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-278, gnl|bosTau2|chr25 (9896731-9896473)
               

               
               1-278, gnl|canFam2|chr6 (34010095-34009232)
               

               
               1-278, gnl|dasNov1|scaffold_6163 (23658-24509)
               

               
               1-278, gnl|echTel1|scaffold_294373 (4311-5062)
               

               
               1-278, gnl|hg17|chr16 (11870200-11871074)
               

               
               1-278, gnl|Hg17|chr16 (11871135-11870850)
               

               
               1-278, gnl|loxAfr1|scaffold_49298 (9284-10086)
               

               
               1-278, gnl|mm7|chr16 (10896412-10897213)
               

               
               1-278, gnl|Mm7|chr16 (10897273-10897017)
               

               
               1-278, gnl|monDom2|scaffold_17 (28209874-28210707)
               

               
               1-278, gnl|oryCun1|scaffold_184882 (60386-61206)
               

               
               1-278, gnl|panTro1|chr18 (12200259-12201133)
               

               
               1-278, gnl|rheMac2|chr20 (11939698-11940570)
               

               
               1-278, gnl|rn3|chr10 (4287034-4286223)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-278, gnl|bosTau2|chr25 (9896731-9896473)
               

               
               1-278, gnl|canFam2|chr6 (34010095-34009232)
               

               
               1-278, gnl|dasNov1|scaffold_6163 (23658-24509)
               

               
               1-278, gnl|echTel1|scaffold_294373 (4311-5062)
               

               
               1-278, gnl|hg17|chr16 (11870200-11871074)
               

               
               1-278, gnl|Hg17|chr16 (11871135-11870850)
               

               
               1-278, gnl|loxAfr1|scaffold_49298 (9284-10086)
               

               
               1-278, gnl|mm7|chr16 (10896412-10897213)
               

               
               1-278, gnl|Mm7|chr16 (10897273-10897017)
               

               
               1-278, gnl|monDom2|scaffold_17 (28209874-28210707)
               

               
               1-278, gnl|oryCun1|scaffold_184882 (60386-61206)
               

               
               1-278, gnl|panTro1|chr18 (12200259-12201133)
               

               
               1-278, gnl|rheMac2|chr20 (11939698-11940570)
               

               
               1-278, gnl|rn3|chr10 (4287034-4286223)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	1-278, gnl\|bosTau2\|chr25 (9896731-9896473)
	1-278, gnl\|canFam2\|chr6 (34010095-34009232)
	1-278, gnl\|dasNov1\|scaffold_6163 (23658-24509)
	1-278, gnl\|echTel1\|scaffold_294373 (4311-5062)
	1-278, gnl\|hg17\|chr16 (11870200-11871074)
	1-278, gnl\|Hg17\|chr16 (11871135-11870850)
	1-278, gnl\|loxAfr1\|scaffold_49298 (9284-10086)
	1-278, gnl\|mm7\|chr16 (10896412-10897213)
	1-278, gnl\|Mm7\|chr16 (10897273-10897017)
	1-278, gnl\|monDom2\|scaffold_17 (28209874-28210707)
	1-278, gnl\|oryCun1\|scaffold_184882 (60386-61206)
	1-278, gnl\|panTro1\|chr18 (12200259-12201133)
	1-278, gnl\|rheMac2\|chr20 (11939698-11940570)
	1-278, gnl\|rn3\|chr10 (4287034-4286223)