rcsk30_k4.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATTCTGGAGCATACAACAATGCCCAGGCAAGGCAGAGAAGGTATGCTCGGTTCCTCAG TGGGTGATCTTTTGAAAGAGAATGGGCACCTATAAACCTAGCTGTGGGGCTCCCCTGCCT AGGAGCGGTGGGGAAGAAGTGGCAGAGTTGGGAACCTGAGGGTTTGTAGTCTTGTCAGGT TGTGGTTTATTTCTTCTACTCCAGCCCTGGTGGTCAGATGATCACTTAGAATGTTGCTGG TGAGATCCTGAAAGTTTACTATTATACAAATGTTTTGTGCAGGTCCAGAAAGTTAAGAGA GAGGGAGATTGAGAGATAGAGAGAGAGAGAGAGAGAGAGGGTTCGGGAACCCTGACGCAG AGGGTGAGAGTACCAGCCCATCGTGTCATTGTGAGTATTTAAACTAACATGGCATCATTT ACAAATCCCTTCCAGGGCCCACCTCATGTGAGTAATGTCTAATACCAGCATTTCCCAAAG CAGCCTGGCTGCCAGCAGGGTCATGGCCAAGGGTACATTTGAACAGACTGAGAGAAAAAA AAAAAATTCTTGATTTTTTTTCTTCTTCTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATTCTGGAGCATACAACAATGCCCAGGCAAGGCAGAGAAGGTATGCTCGGTTCCTCAG TGGGTGATCTTTTGAAAGAGAATGGGCACCTATAAACCTAGCTGTGGGGCTCCCCTGCCT AGGAGCGGTGGGGAAGAAGTGGCAGAGTTGGGAACCTGAGGGTTTGTAGTCTTGTCAGGT TGTGGTTTATTTCTTCTACTCCAGCCCTGGTGGTCAGATGATCACTTAGAATGTTGCTGG TGAGATCCTGAAAGTTTACTATTATACAAATGTTTTGTGCAGGTCCAGAAAGTTAAGAGA GAGGGAGATTGAGAGATAGAGAGAGAGAGAGAGAGAGAGGGTTCGGGAACCCTGACGCAG AGGGTGAGAGTACCAGCCCATCGTGTCATTGTGAGTATTTAAACTAACATGGCATCATTT ACAAATCCCTTCCAGGGCCCACCTCATGTGAGTAATGTCTAATACCAGCATTTCCCAAAG CAGCCTGGCTGCCAGCAGGGTCATGGCCAAGGGTACATTTGAACAGACTGAGAGAAAAAA AAAAAATTCTTGATTTTTTTTCTTCTTCTCCC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 467-572, + strand, RNAz p=0.520007 | |
| 483-572, - strand, RNAz p=0.989609 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 467-572, + strand, RNAz p=0.520007 | |
| 483-572, - strand, RNAz p=0.989609 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-314, gnl|bosTau2|chr2 (17004505-17004185) | |
| 1-314, gnl|canFam2|chr36 (22952956-22953686) | |
| 1-314, gnl|dasNov1|scaffold_1057 (83450-82750) | |
| 1-314, gnl|echTel1|scaffold_311028 (70420-71116) | |
| 1-314, gnl|hg17|chr2 (176808402-176809148) | |
| 1-314, gnl|Hg17|chr2 (176808597-176808910) | |
| 1-314, gnl|loxAfr1|scaffold_9144 (6886-6168) | |
| 1-314, gnl|mm7|chr2 (74537009-74537769) | |
| 1-314, gnl|Mm7|chr2 (74537202-74537535) | |
| 1-314, gnl|monDom2|scaffold_2 (76078793-76079525) | |
| 1-314, gnl|oryCun1|scaffold_203561 (41146-40449) | |
| 1-314, gnl|panTro1|chr13 (66461058-66461784) | |
| 1-314, gnl|rheMac2|chr12 (39759398-39760107) | |
| 1-314, gnl|rn3|chr3 (57203868-57204607) | |
| 322-572, gnl|bosTau2|chr2 (17004212-17003962) | |
| 322-572, gnl|canFam2|chr36 (22952956-22953686) | |
| 322-572, gnl|dasNov1|scaffold_1057 (83450-82750) | |
| 322-572, gnl|echTel1|scaffold_311028 (70420-71116) | |
| 322-572, gnl|hg17|chr2 (176808402-176809148) | |
| 322-572, gnl|Hg17|chr2 (176808887-176809174) | |
| 322-572, gnl|loxAfr1|scaffold_9144 (6886-6168) | |
| 322-572, gnl|mm7|chr2 (74537009-74537769) | |
| 322-572, gnl|Mm7|chr2 (74537499-74537792) | |
| 322-572, gnl|monDom2|scaffold_2 (76078793-76079525) | |
| 322-572, gnl|oryCun1|scaffold_203561 (41146-40449) | |
| 322-572, gnl|panTro1|chr13 (66461058-66461784) | |
| 322-572, gnl|rheMac2|chr12 (39759398-39760107) | |
| 322-572, gnl|rn3|chr3 (57203868-57204607) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-314, gnl|bosTau2|chr2 (17004505-17004185) | |
| 1-314, gnl|canFam2|chr36 (22952956-22953686) | |
| 1-314, gnl|dasNov1|scaffold_1057 (83450-82750) | |
| 1-314, gnl|echTel1|scaffold_311028 (70420-71116) | |
| 1-314, gnl|hg17|chr2 (176808402-176809148) | |
| 1-314, gnl|Hg17|chr2 (176808597-176808910) | |
| 1-314, gnl|loxAfr1|scaffold_9144 (6886-6168) | |
| 1-314, gnl|mm7|chr2 (74537009-74537769) | |
| 1-314, gnl|Mm7|chr2 (74537202-74537535) | |
| 1-314, gnl|monDom2|scaffold_2 (76078793-76079525) | |
| 1-314, gnl|oryCun1|scaffold_203561 (41146-40449) | |
| 1-314, gnl|panTro1|chr13 (66461058-66461784) | |
| 1-314, gnl|rheMac2|chr12 (39759398-39760107) | |
| 1-314, gnl|rn3|chr3 (57203868-57204607) | |
| 322-572, gnl|bosTau2|chr2 (17004212-17003962) | |
| 322-572, gnl|canFam2|chr36 (22952956-22953686) | |
| 322-572, gnl|dasNov1|scaffold_1057 (83450-82750) | |
| 322-572, gnl|echTel1|scaffold_311028 (70420-71116) | |
| 322-572, gnl|hg17|chr2 (176808402-176809148) | |
| 322-572, gnl|Hg17|chr2 (176808887-176809174) | |
| 322-572, gnl|loxAfr1|scaffold_9144 (6886-6168) | |
| 322-572, gnl|mm7|chr2 (74537009-74537769) | |
| 322-572, gnl|Mm7|chr2 (74537499-74537792) | |
| 322-572, gnl|monDom2|scaffold_2 (76078793-76079525) | |
| 322-572, gnl|oryCun1|scaffold_203561 (41146-40449) | |
| 322-572, gnl|panTro1|chr13 (66461058-66461784) | |
| 322-572, gnl|rheMac2|chr12 (39759398-39760107) | |
| 322-572, gnl|rn3|chr3 (57203868-57204607) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csk (0.140746) |