Non-Coding RNA Search

rcsp08b_i17.y1

Sequence:


               
               TGTATTATGTCTGGCTGGGAAGGGATTGCATTTTGCAGCTGAGAGCCGGGGCTTCCTTTA
GCTCGGCTCCTCGCGTGCTGCTGGGGTAAGTTGTCTTGAGCCAGGACGGAGAGAGAAAGC
CTCGGACTGCAGTTGCCTAAAAGGAGGACACCTGTGGCTCAGATGCGGTCAACACCATTA
CTTGGCGGATCCTGGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTATTATGTCTGGCTGGGAAGGGATTGCATTTTGCAGCTGAGAGCCGGGGCTTCCTTTA
GCTCGGCTCCTCGCGTGCTGCTGGGGTAAGTTGTCTTGAGCCAGGACGGAGAGAGAAAGC
CTCGGACTGCAGTTGCCTAAAAGGAGGACACCTGTGGCTCAGATGCGGTCAACACCATTA
CTTGGCGGATCCTGGAGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-116, - strand, RNAz p=0.815314

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, - strand, RNAz p=0.815314

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-199, gnl|bosTau2|chr5 (54586194-54585990)
               

               
               1-199, gnl|canFam2|chr27 (33173025-33172596)
               

               
               1-199, gnl|danRer3|chr13 (10918173-10918566)
               

               
               1-199, gnl|dasNov1|scaffold_352 (7130-6710)
               

               
               1-199, gnl|galGal2|chr1 (60031259-60031703)
               

               
               1-199, gnl|hg17|chr12 (16650261-16650690)
               

               
               1-199, gnl|Hg17|chr12 (16650624-16650426)
               

               
               1-199, gnl|loxAfr1|scaffold_7598 (66798-66370)
               

               
               1-199, gnl|mm7|chr6 (138467147-138467591)
               

               
               1-199, gnl|Mm7|chr6 (138467526-138467326)
               

               
               1-199, gnl|monDom2|scaffold_31 (9043725-9043298)
               

               
               1-199, gnl|panTro1|chrUn_random (42944766-42945199)
               

               
               1-199, gnl|rheMac2|chr11 (17019613-17020042)
               

               
               1-199, gnl|rn3|chr4 (175757258-175757681)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-199, gnl|bosTau2|chr5 (54586194-54585990)
               

               
               1-199, gnl|canFam2|chr27 (33173025-33172596)
               

               
               1-199, gnl|danRer3|chr13 (10918173-10918566)
               

               
               1-199, gnl|dasNov1|scaffold_352 (7130-6710)
               

               
               1-199, gnl|galGal2|chr1 (60031259-60031703)
               

               
               1-199, gnl|hg17|chr12 (16650261-16650690)
               

               
               1-199, gnl|Hg17|chr12 (16650624-16650426)
               

               
               1-199, gnl|loxAfr1|scaffold_7598 (66798-66370)
               

               
               1-199, gnl|mm7|chr6 (138467147-138467591)
               

               
               1-199, gnl|Mm7|chr6 (138467526-138467326)
               

               
               1-199, gnl|monDom2|scaffold_31 (9043725-9043298)
               

               
               1-199, gnl|panTro1|chrUn_random (42944766-42945199)
               

               
               1-199, gnl|rheMac2|chr11 (17019613-17020042)
               

               
               1-199, gnl|rn3|chr4 (175757258-175757681)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	1-199, gnl\|bosTau2\|chr5 (54586194-54585990)
	1-199, gnl\|canFam2\|chr27 (33173025-33172596)
	1-199, gnl\|danRer3\|chr13 (10918173-10918566)
	1-199, gnl\|dasNov1\|scaffold_352 (7130-6710)
	1-199, gnl\|galGal2\|chr1 (60031259-60031703)
	1-199, gnl\|hg17\|chr12 (16650261-16650690)
	1-199, gnl\|Hg17\|chr12 (16650624-16650426)
	1-199, gnl\|loxAfr1\|scaffold_7598 (66798-66370)
	1-199, gnl\|mm7\|chr6 (138467147-138467591)
	1-199, gnl\|Mm7\|chr6 (138467526-138467326)
	1-199, gnl\|monDom2\|scaffold_31 (9043725-9043298)
	1-199, gnl\|panTro1\|chrUn_random (42944766-42945199)
	1-199, gnl\|rheMac2\|chr11 (17019613-17020042)
	1-199, gnl\|rn3\|chr4 (175757258-175757681)