Non-Coding RNA Search

rcsp12b_b9.y1

Sequence:


               
               GGAGCCTCTATGCCCTGCAGGAGGAGGTGCTGCACCTCAACCAGCAGCTCGACTCCTCGG
ACCAGCACAGGGACCTGCTGAAGGTCGACCTGTCTGCCTTCCAGACCCGAGGCAACCAGC
TGTGTGGCCTCATCTCAGGCATCATCCGCACCACTTCTGAGAACGGCTTTCCCACTGCAG
AGGACCAGGCTGTGGCAGAGAGGGCGCTGCAGGAAATGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCCTCTATGCCCTGCAGGAGGAGGTGCTGCACCTCAACCAGCAGCTCGACTCCTCGG
ACCAGCACAGGGACCTGCTGAAGGTCGACCTGTCTGCCTTCCAGACCCGAGGCAACCAGC
TGTGTGGCCTCATCTCAGGCATCATCCGCACCACTTCTGAGAACGGCTTTCCCACTGCAG
AGGACCAGGCTGTGGCAGAGAGGGCGCTGCAGGAAATGCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-161, - strand, RNAz p=0.768817

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-161, - strand, RNAz p=0.768817

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               31-146, - strand, RNAmicro p=0.999993

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               31-146, - strand, RNAmicro p=0.999993

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               4-161, gnl|bosTau2|chr11 (78367945-78368102)
               

               
               4-161, gnl|canFam2|chr9 (58388154-58387994)
               

               
               4-161, gnl|danRer3|chrNA (51659544-51659390)
               

               
               4-161, gnl|dasNov1|scaffold_235856 (1792-1952)
               

               
               4-161, gnl|echTel1|scaffold_303808 (86816-86975)
               

               
               4-161, gnl|fr1|chrUn (294597502-294597339)
               

               
               4-161, gnl|galGal2|chr17 (5622531-5622371)
               

               
               4-161, gnl|hg17|chr9 (128365511-128365671)
               

               
               4-161, gnl|Hg17|chr9 (128365522-128365679)
               

               
               4-161, gnl|loxAfr1|scaffold_29977 (1547-1387)
               

               
               4-161, gnl|mm7|chr2 (29947479-29947639)
               

               
               4-161, gnl|Mm7|chr2 (29947490-29947647)
               

               
               4-161, gnl|monDom2|scaffold_51 (3069955-3070115)
               

               
               4-161, gnl|oryCun1|scaffold_198964 (25246-25406)
               

               
               4-161, gnl|panTro1|chr11 (113199067-113199227)
               

               
               4-161, gnl|rheMac2|chr15 (10342825-10342665)
               

               
               4-161, gnl|rn3|chr3 (8929490-8929650)
               

               
               4-161, gnl|tetNig1|chr12 (10062382-10062518)
               

               
               4-161, gnl|xenTro1|scaffold_82 (312420-312260)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-161, gnl|bosTau2|chr11 (78367945-78368102)
               

               
               4-161, gnl|canFam2|chr9 (58388154-58387994)
               

               
               4-161, gnl|danRer3|chrNA (51659544-51659390)
               

               
               4-161, gnl|dasNov1|scaffold_235856 (1792-1952)
               

               
               4-161, gnl|echTel1|scaffold_303808 (86816-86975)
               

               
               4-161, gnl|fr1|chrUn (294597502-294597339)
               

               
               4-161, gnl|galGal2|chr17 (5622531-5622371)
               

               
               4-161, gnl|hg17|chr9 (128365511-128365671)
               

               
               4-161, gnl|Hg17|chr9 (128365522-128365679)
               

               
               4-161, gnl|loxAfr1|scaffold_29977 (1547-1387)
               

               
               4-161, gnl|mm7|chr2 (29947479-29947639)
               

               
               4-161, gnl|Mm7|chr2 (29947490-29947647)
               

               
               4-161, gnl|monDom2|scaffold_51 (3069955-3070115)
               

               
               4-161, gnl|oryCun1|scaffold_198964 (25246-25406)
               

               
               4-161, gnl|panTro1|chr11 (113199067-113199227)
               

               
               4-161, gnl|rheMac2|chr15 (10342825-10342665)
               

               
               4-161, gnl|rn3|chr3 (8929490-8929650)
               

               
               4-161, gnl|tetNig1|chr12 (10062382-10062518)
               

               
               4-161, gnl|xenTro1|scaffold_82 (312420-312260)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	4-161, gnl\|bosTau2\|chr11 (78367945-78368102)
	4-161, gnl\|canFam2\|chr9 (58388154-58387994)
	4-161, gnl\|danRer3\|chrNA (51659544-51659390)
	4-161, gnl\|dasNov1\|scaffold_235856 (1792-1952)
	4-161, gnl\|echTel1\|scaffold_303808 (86816-86975)
	4-161, gnl\|fr1\|chrUn (294597502-294597339)
	4-161, gnl\|galGal2\|chr17 (5622531-5622371)
	4-161, gnl\|hg17\|chr9 (128365511-128365671)
	4-161, gnl\|Hg17\|chr9 (128365522-128365679)
	4-161, gnl\|loxAfr1\|scaffold_29977 (1547-1387)
	4-161, gnl\|mm7\|chr2 (29947479-29947639)
	4-161, gnl\|Mm7\|chr2 (29947490-29947647)
	4-161, gnl\|monDom2\|scaffold_51 (3069955-3070115)
	4-161, gnl\|oryCun1\|scaffold_198964 (25246-25406)
	4-161, gnl\|panTro1\|chr11 (113199067-113199227)
	4-161, gnl\|rheMac2\|chr15 (10342825-10342665)
	4-161, gnl\|rn3\|chr3 (8929490-8929650)
	4-161, gnl\|tetNig1\|chr12 (10062382-10062518)
	4-161, gnl\|xenTro1\|scaffold_82 (312420-312260)