Non-Coding RNA Search

rcsp13b_i11.y1

Sequence:


               
               GGCGCTGACCCTCCAACACGCCTCAGCCTCTCCCGGTCTGACGAACGGCGTGGGACCCTG
AGTGGGGCACCGGCCCCCCCCACGCGACACGACTTCTCCTTTGACCGGGTCTTCCCACCA
GGGAGCAGGCAGGATGAAGTGTTTGAGGAGATTGCCATGCTTGTGCAGTCTGCCCTGGAT
GGTTACCCAGTGTGCATCTTTGCCTATGGCCAGACCGGCAGTGGCAAGACCTTCACCATG
GAGGGTGGGCCTGCGGGAGACCCCCAGGTGGAGGGACTGATCCCCCGGGCCCTGCGGCAC
CTCTTCTCTGTGGCACAGGAGCTCAGTGGCCAGGGCTGGACCTACAGCTTTGTGGCCAGT
TACGTCGAGATCTACAACGAGACTGTCCGAGACCTGCTGGCCACTGGAACCCGGAAGGGC
CAGGCGGGTGAGTGCGAGATTCGCCGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCTGACCCTCCAACACGCCTCAGCCTCTCCCGGTCTGACGAACGGCGTGGGACCCTG
AGTGGGGCACCGGCCCCCCCCACGCGACACGACTTCTCCTTTGACCGGGTCTTCCCACCA
GGGAGCAGGCAGGATGAAGTGTTTGAGGAGATTGCCATGCTTGTGCAGTCTGCCCTGGAT
GGTTACCCAGTGTGCATCTTTGCCTATGGCCAGACCGGCAGTGGCAAGACCTTCACCATG
GAGGGTGGGCCTGCGGGAGACCCCCAGGTGGAGGGACTGATCCCCCGGGCCCTGCGGCAC
CTCTTCTCTGTGGCACAGGAGCTCAGTGGCCAGGGCTGGACCTACAGCTTTGTGGCCAGT
TACGTCGAGATCTACAACGAGACTGTCCGAGACCTGCTGGCCACTGGAACCCGGAAGGGC
CAGGCGGGTGAGTGCGAGATTCGCCGGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2674179|gb|AAB88699.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2674179|gb|AAB88699.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               124-283, + strand, RNAz p=0.817003

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-283, + strand, RNAz p=0.817003

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-450, gnl|bosTau2|chr1 (28456198-28456643)
               

               
               5-450, gnl|Hg17|chr6 (33480875-33481320)
               

               
               5-450, gnl|Mm7|chr17 (25109053-25109498)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-450, gnl|bosTau2|chr1 (28456198-28456643)
               

               
               5-450, gnl|Hg17|chr6 (33480875-33481320)
               

               
               5-450, gnl|Mm7|chr17 (25109053-25109498)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	5-450, gnl\|bosTau2\|chr1 (28456198-28456643)
	5-450, gnl\|Hg17\|chr6 (33480875-33481320)
	5-450, gnl\|Mm7\|chr17 (25109053-25109498)