rcsp20b_b19.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGTACCGCGCAGCCAGCAGGCGCGACTCACCGCTGCTCAGGTTCAGCGTGGGCCCCAG CGAGCCATTGGCGGGAGACTTGAGCACGCAGGTGGCGCCCACGCCCGATGGCAGCCGGAA CGTGCTCACCAGCTGCTGGGGGCTGGCGTCGGGGGACAGCCGCAATCGGTACTCCCGGCG CTCCTCATTGGCATAAGGGATGAAGTTACCGCGGGGCTGGGTGTAGTTGTGGTACTGAGA GGGTGACAGGACCAGTGGGGGCAGGTCACCGATCTCTGGGACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGTACCGCGCAGCCAGCAGGCGCGACTCACCGCTGCTCAGGTTCAGCGTGGGCCCCAG CGAGCCATTGGCGGGAGACTTGAGCACGCAGGTGGCGCCCACGCCCGATGGCAGCCGGAA CGTGCTCACCAGCTGCTGGGGGCTGGCGTCGGGGGACAGCCGCAATCGGTACTCCCGGCG CTCCTCATTGGCATAAGGGATGAAGTTACCGCGGGGCTGGGTGTAGTTGTGGTACTGAGA GGGTGACAGGACCAGTGGGGGCAGGTCACCGATCTCTGGGACG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 51-163, - strand, RNAz p=0.607466 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 51-163, - strand, RNAz p=0.607466 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 2-165, gnl|bosTau2|chr11 (86334010-86334173) | |
| 2-165, gnl|canFam2|chr9 (51958395-51958083) | |
| 2-165, gnl|danRer3|chr5 (14079426-14079738) | |
| 2-165, gnl|echTel1|scaffold_130948 (791-1103) | |
| 2-165, gnl|fr1|chrUn (310371637-310371336) | |
| 2-165, gnl|galGal2|chrUn (36417633-36417940) | |
| 2-165, gnl|hg17|chr9 (137183305-137183614) | |
| 2-165, gnl|Hg17|chr9 (137183443-137183606) | |
| 2-165, gnl|mm7|chr2 (25450453-25450141) | |
| 2-165, gnl|Mm7|chr2 (25450310-25450147) | |
| 2-165, gnl|monDom2|scaffold_1 (188273922-188273612) | |
| 2-165, gnl|panTro1|chr11 (121955899-121956208) | |
| 2-165, gnl|rheMac2|chr15 (1247089-1246780) | |
| 2-165, gnl|rn3|chr3 (3610060-3609748) | |
| 2-165, gnl|tetNig1|chrUn_random (99490745-99491057) | |
| 2-165, gnl|xenTro1|scaffold_302 (1284930-1285233) | |
| 167-270, gnl|bosTau2|chr11 (86334272-86334375) | |
| 167-270, gnl|canFam2|chr9 (51957990-51957867) | |
| 167-270, gnl|danRer3|chr5 (14080990-14081112) | |
| 167-270, gnl|echTel1|scaffold_130948 (1173-1297) | |
| 167-270, gnl|fr1|chrUn (310370469-310370346) | |
| 167-270, gnl|galGal2|chrUn (36418310-36418435) | |
| 167-270, gnl|hg17|chr9 (137183749-137183874) | |
| 167-270, gnl|Hg17|chr9 (137183750-137183853) | |
| 167-270, gnl|mm7|chr2 (25450066-25449942) | |
| 167-270, gnl|Mm7|chr2 (25450063-25449960) | |
| 167-270, gnl|monDom2|scaffold_1 (188272760-188272635) | |
| 167-270, gnl|panTro1|chr11 (121956343-121956468) | |
| 167-270, gnl|rheMac2|chr15 (1246697-1246572) | |
| 167-270, gnl|rn3|chr3 (3609673-3609541) | |
| 167-270, gnl|tetNig1|chrUn_random (99491251-99491373) | |
| 167-270, gnl|xenTro1|scaffold_302 (1285364-1285489) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-165, gnl|bosTau2|chr11 (86334010-86334173) | |
| 2-165, gnl|canFam2|chr9 (51958395-51958083) | |
| 2-165, gnl|danRer3|chr5 (14079426-14079738) | |
| 2-165, gnl|echTel1|scaffold_130948 (791-1103) | |
| 2-165, gnl|fr1|chrUn (310371637-310371336) | |
| 2-165, gnl|galGal2|chrUn (36417633-36417940) | |
| 2-165, gnl|hg17|chr9 (137183305-137183614) | |
| 2-165, gnl|Hg17|chr9 (137183443-137183606) | |
| 2-165, gnl|mm7|chr2 (25450453-25450141) | |
| 2-165, gnl|Mm7|chr2 (25450310-25450147) | |
| 2-165, gnl|monDom2|scaffold_1 (188273922-188273612) | |
| 2-165, gnl|panTro1|chr11 (121955899-121956208) | |
| 2-165, gnl|rheMac2|chr15 (1247089-1246780) | |
| 2-165, gnl|rn3|chr3 (3610060-3609748) | |
| 2-165, gnl|tetNig1|chrUn_random (99490745-99491057) | |
| 2-165, gnl|xenTro1|scaffold_302 (1284930-1285233) | |
| 167-270, gnl|bosTau2|chr11 (86334272-86334375) | |
| 167-270, gnl|canFam2|chr9 (51957990-51957867) | |
| 167-270, gnl|danRer3|chr5 (14080990-14081112) | |
| 167-270, gnl|echTel1|scaffold_130948 (1173-1297) | |
| 167-270, gnl|fr1|chrUn (310370469-310370346) | |
| 167-270, gnl|galGal2|chrUn (36418310-36418435) | |
| 167-270, gnl|hg17|chr9 (137183749-137183874) | |
| 167-270, gnl|Hg17|chr9 (137183750-137183853) | |
| 167-270, gnl|mm7|chr2 (25450066-25449942) | |
| 167-270, gnl|Mm7|chr2 (25450063-25449960) | |
| 167-270, gnl|monDom2|scaffold_1 (188272760-188272635) | |
| 167-270, gnl|panTro1|chr11 (121956343-121956468) | |
| 167-270, gnl|rheMac2|chr15 (1246697-1246572) | |
| 167-270, gnl|rn3|chr3 (3609673-3609541) | |
| 167-270, gnl|tetNig1|chrUn_random (99491251-99491373) | |
| 167-270, gnl|xenTro1|scaffold_302 (1285364-1285489) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) |