Non-Coding RNA Search

rcsp21b_g14.y1

Sequence:


               
               CGTAGTAGCCGGAATCCCTCACGCCCACGCTGAAGAGCTGGATGGAGCCGTTGTCGAAGG
TGCAGACTCTGTCCTTGTGGCTTTGGGAGATGTTGGCCTGAGTGCCCGGCCTCCACTCCA
CGATCTTCTGCACGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTAGTAGCCGGAATCCCTCACGCCCACGCTGAAGAGCTGGATGGAGCCGTTGTCGAAGG
TGCAGACTCTGTCCTTGTGGCTTTGGGAGATGTTGGCCTGAGTGCCCGGCCTCCACTCCA
CGATCTTCTGCACGCC

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               2-136, gnl|bosTau2|chr29 (635680-635814)
               

               
               2-136, gnl|canFam2|chr21 (9956547-9956266)
               

               
               2-136, gnl|dasNov1|scaffold_193971 (925-645)
               

               
               2-136, gnl|echTel1|scaffold_284783 (40226-39945)
               

               
               2-136, gnl|fr1|chrUn (14636849-14637131)
               

               
               2-136, gnl|galGal2|chr1 (177581922-177581641)
               

               
               2-136, gnl|hg17|chr11 (93193868-93194149)
               

               
               2-136, gnl|Hg17|chr11 (93193875-93194009)
               

               
               2-136, gnl|loxAfr1|scaffold_46260 (1599-1318)
               

               
               2-136, gnl|mm7|chr9 (15096107-15095830)
               

               
               2-136, gnl|Mm7|chr9 (15096098-15095964)
               

               
               2-136, gnl|monDom2|scaffold_15 (4032673-4032392)
               

               
               2-136, gnl|oryCun1|scaffold_211021 (43389-43670)
               

               
               2-136, gnl|panTro1|chr9 (95100086-95100367)
               

               
               2-136, gnl|rheMac2|chr14 (92379613-92379894)
               

               
               2-136, gnl|rn3|chr8 (12059533-12059256)
               

               
               2-136, gnl|tetNig1|chrUn_random (14890016-14890286)
               

               
               2-136, gnl|xenTro1|scaffold_645 (52737-52452)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-136, gnl|bosTau2|chr29 (635680-635814)
               

               
               2-136, gnl|canFam2|chr21 (9956547-9956266)
               

               
               2-136, gnl|dasNov1|scaffold_193971 (925-645)
               

               
               2-136, gnl|echTel1|scaffold_284783 (40226-39945)
               

               
               2-136, gnl|fr1|chrUn (14636849-14637131)
               

               
               2-136, gnl|galGal2|chr1 (177581922-177581641)
               

               
               2-136, gnl|hg17|chr11 (93193868-93194149)
               

               
               2-136, gnl|Hg17|chr11 (93193875-93194009)
               

               
               2-136, gnl|loxAfr1|scaffold_46260 (1599-1318)
               

               
               2-136, gnl|mm7|chr9 (15096107-15095830)
               

               
               2-136, gnl|Mm7|chr9 (15096098-15095964)
               

               
               2-136, gnl|monDom2|scaffold_15 (4032673-4032392)
               

               
               2-136, gnl|oryCun1|scaffold_211021 (43389-43670)
               

               
               2-136, gnl|panTro1|chr9 (95100086-95100367)
               

               
               2-136, gnl|rheMac2|chr14 (92379613-92379894)
               

               
               2-136, gnl|rn3|chr8 (12059533-12059256)
               

               
               2-136, gnl|tetNig1|chrUn_random (14890016-14890286)
               

               
               2-136, gnl|xenTro1|scaffold_645 (52737-52452)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               csp (0.161186)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	2-136, gnl\|bosTau2\|chr29 (635680-635814)
	2-136, gnl\|canFam2\|chr21 (9956547-9956266)
	2-136, gnl\|dasNov1\|scaffold_193971 (925-645)
	2-136, gnl\|echTel1\|scaffold_284783 (40226-39945)
	2-136, gnl\|fr1\|chrUn (14636849-14637131)
	2-136, gnl\|galGal2\|chr1 (177581922-177581641)
	2-136, gnl\|hg17\|chr11 (93193868-93194149)
	2-136, gnl\|Hg17\|chr11 (93193875-93194009)
	2-136, gnl\|loxAfr1\|scaffold_46260 (1599-1318)
	2-136, gnl\|mm7\|chr9 (15096107-15095830)
	2-136, gnl\|Mm7\|chr9 (15096098-15095964)
	2-136, gnl\|monDom2\|scaffold_15 (4032673-4032392)
	2-136, gnl\|oryCun1\|scaffold_211021 (43389-43670)
	2-136, gnl\|panTro1\|chr9 (95100086-95100367)
	2-136, gnl\|rheMac2\|chr14 (92379613-92379894)
	2-136, gnl\|rn3\|chr8 (12059533-12059256)
	2-136, gnl\|tetNig1\|chrUn_random (14890016-14890286)
	2-136, gnl\|xenTro1\|scaffold_645 (52737-52452)