Non-Coding RNA Search

rcst04_o15.y1

Sequence:


               
               CGGAATCGGACGAGGGGAACTCCGAGTTTTCCCTCTTTCTGAAGTTATTCCCGTCAGACT
GATCCTAACATCAGCCAGAGGCAATTAGCTAGAGACATGCTGATGGATGCGAAAATCGGG
CGTATGAAAATTATGTACCTAGATAATGAATTTAGATAAGTAATTTTGATGGGAAATTTG
AATAAGTGATTTCATTATATTACCAAATCAAAACTCAGTTCAATTGTGCATTTCTGAAGT
ATCTATGTAATTTCCTGCTTGGAAAATTCATATTTATGTACCTAATAATATAAATATTCT
ATTACTTTATATGTGTTATGAGTTGAATATTTAAGGAATATTTATTAATTTGAATGTCCT
CAAAATATTATAGTCTAAATCAACAACCAGTGACGTCAACTTGCTATAAAAAGATTTGTC
ATATTGGGGggagttcccgtcatagctcagtggaaacaaatctgattaggaaccatgagg
cttcgggttcgatctctggcttcgctcggtgggttaaggatctggcg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAATCGGACGAGGGGAACTCCGAGTTTTCCCTCTTTCTGAAGTTATTCCCGTCAGACT
GATCCTAACATCAGCCAGAGGCAATTAGCTAGAGACATGCTGATGGATGCGAAAATCGGG
CGTATGAAAATTATGTACCTAGATAATGAATTTAGATAAGTAATTTTGATGGGAAATTTG
AATAAGTGATTTCATTATATTACCAAATCAAAACTCAGTTCAATTGTGCATTTCTGAAGT
ATCTATGTAATTTCCTGCTTGGAAAATTCATATTTATGTACCTAATAATATAAATATTCT
ATTACTTTATATGTGTTATGAGTTGAATATTTAAGGAATATTTATTAATTTGAATGTCCT
CAAAATATTATAGTCTAAATCAACAACCAGTGACGTCAACTTGCTATAAAAAGATTTGTC
ATATTGGGGggagttcccgtcatagctcagtggaaacaaatctgattaggaaccatgagg
cttcgggttcgatctctggcttcgctcggtgggttaaggatctggcg

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               24-425, gnl|bosTau2|chr17 (7125870-7125469)
               

               
               24-425, gnl|canFam2|chr13 (25284607-25285037)
               

               
               24-425, gnl|dasNov1|scaffold_181 (93017-92546)
               

               
               24-425, gnl|hg17|chr8 (125151218-125151644)
               

               
               24-425, gnl|Hg17|chr8 (125151228-125151629)
               

               
               24-425, gnl|loxAfr1|scaffold_1100 (73465-73925)
               

               
               24-425, gnl|mm7|chr15 (58694707-58695131)
               

               
               24-425, gnl|Mm7|chr15 (58694717-58695116)
               

               
               24-425, gnl|oryCun1|scaffold_193425 (116695-117110)
               

               
               24-425, gnl|panTro1|chr7 (127880153-127880582)
               

               
               24-425, gnl|rheMac2|chr8 (126647751-126648178)
               

               
               24-425, gnl|rn3|chr7 (95419920-95420333)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-425, gnl|bosTau2|chr17 (7125870-7125469)
               

               
               24-425, gnl|canFam2|chr13 (25284607-25285037)
               

               
               24-425, gnl|dasNov1|scaffold_181 (93017-92546)
               

               
               24-425, gnl|hg17|chr8 (125151218-125151644)
               

               
               24-425, gnl|Hg17|chr8 (125151228-125151629)
               

               
               24-425, gnl|loxAfr1|scaffold_1100 (73465-73925)
               

               
               24-425, gnl|mm7|chr15 (58694707-58695131)
               

               
               24-425, gnl|Mm7|chr15 (58694717-58695116)
               

               
               24-425, gnl|oryCun1|scaffold_193425 (116695-117110)
               

               
               24-425, gnl|panTro1|chr7 (127880153-127880582)
               

               
               24-425, gnl|rheMac2|chr8 (126647751-126648178)
               

               
               24-425, gnl|rn3|chr7 (95419920-95420333)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	24-425, gnl\|bosTau2\|chr17 (7125870-7125469)
	24-425, gnl\|canFam2\|chr13 (25284607-25285037)
	24-425, gnl\|dasNov1\|scaffold_181 (93017-92546)
	24-425, gnl\|hg17\|chr8 (125151218-125151644)
	24-425, gnl\|Hg17\|chr8 (125151228-125151629)
	24-425, gnl\|loxAfr1\|scaffold_1100 (73465-73925)
	24-425, gnl\|mm7\|chr15 (58694707-58695131)
	24-425, gnl\|Mm7\|chr15 (58694717-58695116)
	24-425, gnl\|oryCun1\|scaffold_193425 (116695-117110)
	24-425, gnl\|panTro1\|chr7 (127880153-127880582)
	24-425, gnl\|rheMac2\|chr8 (126647751-126648178)
	24-425, gnl\|rn3\|chr7 (95419920-95420333)