Non-Coding RNA Search

rcst06_a2C11.y1

Sequence:


               
               ACCACCCCCTCCAAAAAAACCCCACAAAACCCCTAAAGAACAAAACAAAACAAAAACAGA
AAAAACTGCTTTTCTCCTCTTTTCCTCCATTTTAAAAAAACCTATAATGGATGGCTATAT
AATAGAATGTATAGAATAATATAGAATGTGCATATTAATATACTAACTATAAATACATAT
AATATATATGTATAATTATGTATGCATAATATATAAGTGTATATATAGTATTAACATATC
AATACCATGATCCTATTGGTATATGTTGGCAAACCACTTTAATTTTTCTAATTAAGAGAA
TTATGCATAGTTTTTTTTTGCTTTGTTAACATCTTAGTGTAATAACAGCGTGGGTGTGAG
TAGTCACACTCAGAGAGGCCGTCCCCATGGAAGAACTAGGAACTGACTAGGGTGCTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACCCCCTCCAAAAAAACCCCACAAAACCCCTAAAGAACAAAACAAAACAAAAACAGA
AAAAACTGCTTTTCTCCTCTTTTCCTCCATTTTAAAAAAACCTATAATGGATGGCTATAT
AATAGAATGTATAGAATAATATAGAATGTGCATATTAATATACTAACTATAAATACATAT
AATATATATGTATAATTATGTATGCATAATATATAAGTGTATATATAGTATTAACATATC
AATACCATGATCCTATTGGTATATGTTGGCAAACCACTTTAATTTTTCTAATTAAGAGAA
TTATGCATAGTTTTTTTTTGCTTTGTTAACATCTTAGTGTAATAACAGCGTGGGTGTGAG
TAGTCACACTCAGAGAGGCCGTCCCCATGGAAGAACTAGGAACTGACTAGGGTGCTAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               278-389, - strand, RNAz p=0.584548

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-389, - strand, RNAz p=0.584548

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               52-420, gnl|bosTau2|chr5 (47376337-47375994)
               

               
               52-420, gnl|canFam2|chr27 (19463466-19463274)
               

               
               52-420, gnl|hg17|chr12 (32474749-32474918)
               

               
               52-420, gnl|oryCun1|scaffold_51239 (936-1090)
               

               
               52-420, gnl|panTro1|chrUn_random (34585395-34585226)
               

               
               52-420, gnl|rheMac2|chr11 (32507511-32507683)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-420, gnl|bosTau2|chr5 (47376337-47375994)
               

               
               52-420, gnl|canFam2|chr27 (19463466-19463274)
               

               
               52-420, gnl|hg17|chr12 (32474749-32474918)
               

               
               52-420, gnl|oryCun1|scaffold_51239 (936-1090)
               

               
               52-420, gnl|panTro1|chrUn_random (34585395-34585226)
               

               
               52-420, gnl|rheMac2|chr11 (32507511-32507683)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	52-420, gnl\|bosTau2\|chr5 (47376337-47375994)
	52-420, gnl\|canFam2\|chr27 (19463466-19463274)
	52-420, gnl\|hg17\|chr12 (32474749-32474918)
	52-420, gnl\|oryCun1\|scaffold_51239 (936-1090)
	52-420, gnl\|panTro1\|chrUn_random (34585395-34585226)
	52-420, gnl\|rheMac2\|chr11 (32507511-32507683)