Non-Coding RNA Search

rcst08_d22.y1

Sequence:


               
               GGCAGGCTGGCCCAAGAGGCTTCTGCAATCAATTTGTTGTCTCAGGACATCCCTGAGTGT
TGATAAACCATCCCAAGTGTTCCCTTGGGAGGGTCATCTGCAGGTGCAGGAGATCCCAGA
GGAGATGAATCAGCAGCAGTCCTCTGTGGTCCCTGAGTTGATCAACCAGCTGCCTGAAGA
GGATGTTCCCCAAGTCCAGTATCCATCTAGTAATTCAAATCCTCAGAGCCAGTCTCTAGC
CCATGACCAGAACTCACCTCTTCCACCAGCAACATGTGATTAATCACTTTCTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGGCTGGCCCAAGAGGCTTCTGCAATCAATTTGTTGTCTCAGGACATCCCTGAGTGT
TGATAAACCATCCCAAGTGTTCCCTTGGGAGGGTCATCTGCAGGTGCAGGAGATCCCAGA
GGAGATGAATCAGCAGCAGTCCTCTGTGGTCCCTGAGTTGATCAACCAGCTGCCTGAAGA
GGATGTTCCCCAAGTCCAGTATCCATCTAGTAATTCAAATCCTCAGAGCCAGTCTCTAGC
CCATGACCAGAACTCACCTCTTCCACCAGCAACATGTGATTAATCACTTTCTCCTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-160, + strand, RNAz p=0.996624
               

               
               10-123, - strand, RNAz p=0.864312

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-160, + strand, RNAz p=0.996624
               

               
               10-123, - strand, RNAz p=0.864312

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               29-139, - strand, RNAmicro p=0.918612

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               29-139, - strand, RNAmicro p=0.918612

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF502586, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF502586, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-296, gnl|bosTau2|chr21 (34386546-34386252)
               

               
               1-296, gnl|canFam2|chr30 (13376763-13377467)
               

               
               1-296, gnl|dasNov1|scaffold_71294 (6105-5464)
               

               
               1-296, gnl|echTel1|scaffold_322287 (249164-249796)
               

               
               1-296, gnl|hg17|chr15 (41613628-41614313)
               

               
               1-296, gnl|Hg17|chr15 (41614295-41614007)
               

               
               1-296, gnl|loxAfr1|scaffold_22371 (47308-46640)
               

               
               1-296, gnl|mm7|chr2 (121052069-121052699)
               

               
               1-296, gnl|Mm7|chr2 (121052681-121052404)
               

               
               1-296, gnl|monDom2|scaffold_53 (10444856-10444264)
               

               
               1-296, gnl|panTro1|chr16 (41615368-41616053)
               

               
               1-296, gnl|rheMac2|chr7 (21973031-21973701)
               

               
               1-296, gnl|rn3|chr3 (108011898-108012537)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-296, gnl|bosTau2|chr21 (34386546-34386252)
               

               
               1-296, gnl|canFam2|chr30 (13376763-13377467)
               

               
               1-296, gnl|dasNov1|scaffold_71294 (6105-5464)
               

               
               1-296, gnl|echTel1|scaffold_322287 (249164-249796)
               

               
               1-296, gnl|hg17|chr15 (41613628-41614313)
               

               
               1-296, gnl|Hg17|chr15 (41614295-41614007)
               

               
               1-296, gnl|loxAfr1|scaffold_22371 (47308-46640)
               

               
               1-296, gnl|mm7|chr2 (121052069-121052699)
               

               
               1-296, gnl|Mm7|chr2 (121052681-121052404)
               

               
               1-296, gnl|monDom2|scaffold_53 (10444856-10444264)
               

               
               1-296, gnl|panTro1|chr16 (41615368-41616053)
               

               
               1-296, gnl|rheMac2|chr7 (21973031-21973701)
               

               
               1-296, gnl|rn3|chr3 (108011898-108012537)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	1-160, + strand, RNAz p=0.996624
	10-123, - strand, RNAz p=0.864312

	1-296, gnl\|bosTau2\|chr21 (34386546-34386252)
	1-296, gnl\|canFam2\|chr30 (13376763-13377467)
	1-296, gnl\|dasNov1\|scaffold_71294 (6105-5464)
	1-296, gnl\|echTel1\|scaffold_322287 (249164-249796)
	1-296, gnl\|hg17\|chr15 (41613628-41614313)
	1-296, gnl\|Hg17\|chr15 (41614295-41614007)
	1-296, gnl\|loxAfr1\|scaffold_22371 (47308-46640)
	1-296, gnl\|mm7\|chr2 (121052069-121052699)
	1-296, gnl\|Mm7\|chr2 (121052681-121052404)
	1-296, gnl\|monDom2\|scaffold_53 (10444856-10444264)
	1-296, gnl\|panTro1\|chr16 (41615368-41616053)
	1-296, gnl\|rheMac2\|chr7 (21973031-21973701)
	1-296, gnl\|rn3\|chr3 (108011898-108012537)