Non-Coding RNA Search

rcst13_d16.y1

Sequence:


               
               GAGCGAGGCGGAGGCCGGGCGCCGCGCCCGAGTGGCACTTGGCGTCCAGGACGGCGCGTT
GGCTGGTGCTGCAGACGGGCCGGCGGGCCAGCCGGTGGCTGGGGAGCGCCGGGAACGCCT
CGTTCCCGCACAGGTCGCGGGTGCCGCAGCCGCGCACGCTCACGTTCCGGCCGCTGGGAA
TGTTCCGATTCTTGAGGTGGGGCCGGTCATGGTcagcatgtggaagttcccaggccaggg
actgaacctgagccacgacagtagccagaaccacagaagtgacaatgctggatccttaac
ctgctgagcccctagggaactcccCTTCTTCAGACACCAGGTCCAGCTGGACACACTCGG
TCTCCTCGCTGGGACACTGCATGTAGAAGGAGTGGTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGAGGCGGAGGCCGGGCGCCGCGCCCGAGTGGCACTTGGCGTCCAGGACGGCGCGTT
GGCTGGTGCTGCAGACGGGCCGGCGGGCCAGCCGGTGGCTGGGGAGCGCCGGGAACGCCT
CGTTCCCGCACAGGTCGCGGGTGCCGCAGCCGCGCACGCTCACGTTCCGGCCGCTGGGAA
TGTTCCGATTCTTGAGGTGGGGCCGGTCATGGTcagcatgtggaagttcccaggccaggg
actgaacctgagccacgacagtagccagaaccacagaagtgacaatgctggatccttaac
ctgctgagcccctagggaactcccCTTCTTCAGACACCAGGTCCAGCTGGACACACTCGG
TCTCCTCGCTGGGACACTGCATGTAGAAGGAGTGGTTGC

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               3-174, gnl|bosTau2|chr18 (46150248-46150419)
               

               
               3-174, gnl|canFam2|chr1 (114347590-114347113)
               

               
               3-174, gnl|dasNov1|scaffold_38916 (13550-14034)
               

               
               3-174, gnl|echTel1|scaffold_277025 (41027-40542)
               

               
               3-174, gnl|hg17|chr19 (48895464-48895958)
               

               
               3-174, gnl|Hg17|chr19 (48895717-48895540)
               

               
               3-174, gnl|loxAfr1|scaffold_65778 (3543-4024)
               

               
               3-174, gnl|mm7|chr7 (21231639-21231281)
               

               
               3-174, gnl|panTro1|chr20 (45832296-45832786)
               

               
               3-174, gnl|rheMac2|chr19 (50160348-50160821)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-174, gnl|bosTau2|chr18 (46150248-46150419)
               

               
               3-174, gnl|canFam2|chr1 (114347590-114347113)
               

               
               3-174, gnl|dasNov1|scaffold_38916 (13550-14034)
               

               
               3-174, gnl|echTel1|scaffold_277025 (41027-40542)
               

               
               3-174, gnl|hg17|chr19 (48895464-48895958)
               

               
               3-174, gnl|Hg17|chr19 (48895717-48895540)
               

               
               3-174, gnl|loxAfr1|scaffold_65778 (3543-4024)
               

               
               3-174, gnl|mm7|chr7 (21231639-21231281)
               

               
               3-174, gnl|panTro1|chr20 (45832296-45832786)
               

               
               3-174, gnl|rheMac2|chr19 (50160348-50160821)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	3-174, gnl\|bosTau2\|chr18 (46150248-46150419)
	3-174, gnl\|canFam2\|chr1 (114347590-114347113)
	3-174, gnl\|dasNov1\|scaffold_38916 (13550-14034)
	3-174, gnl\|echTel1\|scaffold_277025 (41027-40542)
	3-174, gnl\|hg17\|chr19 (48895464-48895958)
	3-174, gnl\|Hg17\|chr19 (48895717-48895540)
	3-174, gnl\|loxAfr1\|scaffold_65778 (3543-4024)
	3-174, gnl\|mm7\|chr7 (21231639-21231281)
	3-174, gnl\|panTro1\|chr20 (45832296-45832786)
	3-174, gnl\|rheMac2\|chr19 (50160348-50160821)