Non-Coding RNA Search

rcst14_e8.y1

Sequence:


               
               GAGGCGGATTCCTCTCGCTCGCGCCTCGCTCCGCGTCTCTGCAACCATGTCTGACAAACC
CGATATGGCTGAGATTGAGAAATTCGATAAGTCGAAATTGAAGAAGACAGAAACGCAAGA
GAAAAATCCACTGCCTTCAAAAGAAACGATTGAACAGGAGAAGCAAGCAGGCGAGTCGTA
ATGAGGCGCGCGCCGCCAGTATGCACTGTACATTCCACAAGCATTGCCTTCTTATTTTAC
TTCTTTTAGCTGTTTAACTTTGTAAGATGCAAAGAGGTTGGATCAAGTTTAAATGACTGT
GCTGCCCCTTTTCACATCAAAGAATGGCGAACTACTGACACGAAGGCCGCGCCTGCCTCT
CCCATCTGCCTGGGTGGCTGGCAGGGAAGGAAAAGAACTTGCATGTTGGTGAAGGAGGAA
GCTGGGTGGAATTTAGAGTAAAAAGCGAGCTGGTCCAAGGTGTCCTGCGGGCTGTAAAAT
GCAGTTTAATCAGAGTGCCATTTTTTTTTGTTCAAATGATTTTAATTATTGGAATGCACA
ATTTTTTTAATATGCAAATAAAAAGTTTAAAACGTGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCGGATTCCTCTCGCTCGCGCCTCGCTCCGCGTCTCTGCAACCATGTCTGACAAACC
CGATATGGCTGAGATTGAGAAATTCGATAAGTCGAAATTGAAGAAGACAGAAACGCAAGA
GAAAAATCCACTGCCTTCAAAAGAAACGATTGAACAGGAGAAGCAAGCAGGCGAGTCGTA
ATGAGGCGCGCGCCGCCAGTATGCACTGTACATTCCACAAGCATTGCCTTCTTATTTTAC
TTCTTTTAGCTGTTTAACTTTGTAAGATGCAAAGAGGTTGGATCAAGTTTAAATGACTGT
GCTGCCCCTTTTCACATCAAAGAATGGCGAACTACTGACACGAAGGCCGCGCCTGCCTCT
CCCATCTGCCTGGGTGGCTGGCAGGGAAGGAAAAGAACTTGCATGTTGGTGAAGGAGGAA
GCTGGGTGGAATTTAGAGTAAAAAGCGAGCTGGTCCAAGGTGTCCTGCGGGCTGTAAAAT
GCAGTTTAATCAGAGTGCCATTTTTTTTTGTTCAAATGATTTTAATTATTGGAATGCACA
ATTTTTTTAATATGCAAATAAAAAGTTTAAAACGTGAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38679435|gb|AAR26539.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38679435|gb|AAR26539.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               342-439, + strand, RNAz p=0.508611

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-439, + strand, RNAz p=0.508611

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-586, gnl|bosTau2|chr11 (41567465-41568057)
               

               
               7-586, gnl|Hg17|chr4 (92117413-92116817)
               

               
               7-586, gnl|Mm7|chrX (161982420-161981455)
               


               
               25-585, gnl|bosTau2|chr10 (26212903-26213471)
               

               
               25-585, gnl|Hg17|chr9 (128184025-128184602)
               

               
               25-585, gnl|Mm7|chrX (161982414-161981460)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-586, gnl|bosTau2|chr11 (41567465-41568057)
               

               
               7-586, gnl|Hg17|chr4 (92117413-92116817)
               

               
               7-586, gnl|Mm7|chrX (161982420-161981455)
               


               
               25-585, gnl|bosTau2|chr10 (26212903-26213471)
               

               
               25-585, gnl|Hg17|chr9 (128184025-128184602)
               

               
               25-585, gnl|Mm7|chrX (161982414-161981460)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	7-586, gnl\|bosTau2\|chr11 (41567465-41568057)
	7-586, gnl\|Hg17\|chr4 (92117413-92116817)
	7-586, gnl\|Mm7\|chrX (161982420-161981455)

	25-585, gnl\|bosTau2\|chr10 (26212903-26213471)
	25-585, gnl\|Hg17\|chr9 (128184025-128184602)
	25-585, gnl\|Mm7\|chrX (161982414-161981460)