Non-Coding RNA Search

rcst15_k3.y1

Sequence:


               
               GAGGCGTTAGGATGGCCAGCTCCTTCAACGGCCCCCTCGTGATGTGAGGTTGAATTTTAA
AACTGTTTCTTTAATGAACCATAAGCTGATTATTACCTTTCTGCTCTGGGCATTTCAAAC
AATTGCATTTTGAAATTTTAATGCTCTATTTCTGCATTATCTACCAAAATACCTCTTTTT
TTTCCTTTCTTAAAGAGAATTCAATTGAAAGCTTTTGTATTTGCTGTGAGTTCAGTAATA
AAGCAACAGAGAAGAAAATATGGGACATGGGAGCAGCACGTTTTGCTTGGCTATGGAATT
TTCGTGCTTAACTTCTATTAAATTTTGTTTTATggagttcccattgtggctcagtggtag
cgaacccaaccagtatccatgaggatacgggttcaatccctgacctcactcagtgggtta
aggatctggcgctgccatgagctgtggtgtaggttgcagatgaggctcagatccTGCCTT
ACTACAGCTCCGATTCGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCGTTAGGATGGCCAGCTCCTTCAACGGCCCCCTCGTGATGTGAGGTTGAATTTTAA
AACTGTTTCTTTAATGAACCATAAGCTGATTATTACCTTTCTGCTCTGGGCATTTCAAAC
AATTGCATTTTGAAATTTTAATGCTCTATTTCTGCATTATCTACCAAAATACCTCTTTTT
TTTCCTTTCTTAAAGAGAATTCAATTGAAAGCTTTTGTATTTGCTGTGAGTTCAGTAATA
AAGCAACAGAGAAGAAAATATGGGACATGGGAGCAGCACGTTTTGCTTGGCTATGGAATT
TTCGTGCTTAACTTCTATTAAATTTTGTTTTATggagttcccattgtggctcagtggtag
cgaacccaaccagtatccatgaggatacgggttcaatccctgacctcactcagtgggtta
aggatctggcgctgccatgagctgtggtgtaggttgcagatgaggctcagatccTGCCTT
ACTACAGCTCCGATTCGACCC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               47-331, gnl|bosTau2|chr1 (81656570-81656859)
               

               
               47-331, gnl|canFam2|chr5 (63518946-63519574)
               

               
               47-331, gnl|hg17|chr1 (6686252-6686807)
               

               
               47-331, gnl|Hg17|chr1 (6686578-6686304)
               

               
               47-331, gnl|loxAfr1|scaffold_20761 (27043-27725)
               

               
               47-331, gnl|mm7|chr4 (150928678-150928158)
               

               
               47-331, gnl|Mm7|chr4 (150928369-150928616)
               

               
               47-331, gnl|oryCun1|scaffold_168940 (27793-28350)
               

               
               47-331, gnl|panTro1|chr1 (6652899-6653452)
               

               
               47-331, gnl|rheMac2|chr1 (9716449-9716935)
               

               
               47-331, gnl|rn3|chr5 (169178739-169178204)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-331, gnl|bosTau2|chr1 (81656570-81656859)
               

               
               47-331, gnl|canFam2|chr5 (63518946-63519574)
               

               
               47-331, gnl|hg17|chr1 (6686252-6686807)
               

               
               47-331, gnl|Hg17|chr1 (6686578-6686304)
               

               
               47-331, gnl|loxAfr1|scaffold_20761 (27043-27725)
               

               
               47-331, gnl|mm7|chr4 (150928678-150928158)
               

               
               47-331, gnl|Mm7|chr4 (150928369-150928616)
               

               
               47-331, gnl|oryCun1|scaffold_168940 (27793-28350)
               

               
               47-331, gnl|panTro1|chr1 (6652899-6653452)
               

               
               47-331, gnl|rheMac2|chr1 (9716449-9716935)
               

               
               47-331, gnl|rn3|chr5 (169178739-169178204)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	47-331, gnl\|bosTau2\|chr1 (81656570-81656859)
	47-331, gnl\|canFam2\|chr5 (63518946-63519574)
	47-331, gnl\|hg17\|chr1 (6686252-6686807)
	47-331, gnl\|Hg17\|chr1 (6686578-6686304)
	47-331, gnl\|loxAfr1\|scaffold_20761 (27043-27725)
	47-331, gnl\|mm7\|chr4 (150928678-150928158)
	47-331, gnl\|Mm7\|chr4 (150928369-150928616)
	47-331, gnl\|oryCun1\|scaffold_168940 (27793-28350)
	47-331, gnl\|panTro1\|chr1 (6652899-6653452)
	47-331, gnl\|rheMac2\|chr1 (9716449-9716935)
	47-331, gnl\|rn3\|chr5 (169178739-169178204)