Non-Coding RNA Search

rcst17_l18.y1

Sequence:


               
               AAGAACAAGGTTTCTATGGCTCCAGATGGGAATGGTGGTCTTTATCGGGCTCTTGCAGCC
CAGAATATTGTGGAGGATATGGAGCAGAGAGGCATTTGGAGCATTCATGTCTATTGTGTT
GACAACATATTAGTAAAAGTGGCAGACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAACAAGGTTTCTATGGCTCCAGATGGGAATGGTGGTCTTTATCGGGCTCTTGCAGCC
CAGAATATTGTGGAGGATATGGAGCAGAGAGGCATTTGGAGCATTCATGTCTATTGTGTT
GACAACATATTAGTAAAAGTGGCAGACCCA

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               11-150, gnl|bosTau2|chr3 (7278759-7278898)
               

               
               11-150, gnl|canFam2|chr38 (23205885-23205742)
               

               
               11-150, gnl|danRer3|chr5 (25227543-25227686)
               

               
               11-150, gnl|dasNov1|scaffold_192825 (517-660)
               

               
               11-150, gnl|echTel1|scaffold_302285 (4812-4977)
               

               
               11-150, gnl|fr1|chrUn (71378346-71378489)
               

               
               11-150, gnl|galGal2|chr8 (3750767-3750625)
               

               
               11-150, gnl|Hg17|chr1 (159282728-159282859)
               

               
               11-150, gnl|hg17|chr17 (42800617-42800760)
               

               
               11-150, gnl|loxAfr1|scaffold_10175 (976-833)
               

               
               11-150, gnl|mm7|chr1 (170133571-170133428)
               

               
               11-150, gnl|Mm7|chr1 (170133583-170133448)
               

               
               11-150, gnl|monDom2|scaffold_16 (12370511-12370654)
               

               
               11-150, gnl|panTro1|chr19 (62312621-62312478)
               

               
               11-150, gnl|rheMac2|chr16 (57440798-57440941)
               

               
               11-150, gnl|rn3|chr6 (16897099-16897242)
               

               
               11-150, gnl|tetNig1|chr1_random (3065698-3065555)
               

               
               11-150, gnl|xenTro1|scaffold_74 (1208269-1208412)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-150, gnl|bosTau2|chr3 (7278759-7278898)
               

               
               11-150, gnl|canFam2|chr38 (23205885-23205742)
               

               
               11-150, gnl|danRer3|chr5 (25227543-25227686)
               

               
               11-150, gnl|dasNov1|scaffold_192825 (517-660)
               

               
               11-150, gnl|echTel1|scaffold_302285 (4812-4977)
               

               
               11-150, gnl|fr1|chrUn (71378346-71378489)
               

               
               11-150, gnl|galGal2|chr8 (3750767-3750625)
               

               
               11-150, gnl|Hg17|chr1 (159282728-159282859)
               

               
               11-150, gnl|hg17|chr17 (42800617-42800760)
               

               
               11-150, gnl|loxAfr1|scaffold_10175 (976-833)
               

               
               11-150, gnl|mm7|chr1 (170133571-170133428)
               

               
               11-150, gnl|Mm7|chr1 (170133583-170133448)
               

               
               11-150, gnl|monDom2|scaffold_16 (12370511-12370654)
               

               
               11-150, gnl|panTro1|chr19 (62312621-62312478)
               

               
               11-150, gnl|rheMac2|chr16 (57440798-57440941)
               

               
               11-150, gnl|rn3|chr6 (16897099-16897242)
               

               
               11-150, gnl|tetNig1|chr1_random (3065698-3065555)
               

               
               11-150, gnl|xenTro1|scaffold_74 (1208269-1208412)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cst (0.140036)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	11-150, gnl\|bosTau2\|chr3 (7278759-7278898)
	11-150, gnl\|canFam2\|chr38 (23205885-23205742)
	11-150, gnl\|danRer3\|chr5 (25227543-25227686)
	11-150, gnl\|dasNov1\|scaffold_192825 (517-660)
	11-150, gnl\|echTel1\|scaffold_302285 (4812-4977)
	11-150, gnl\|fr1\|chrUn (71378346-71378489)
	11-150, gnl\|galGal2\|chr8 (3750767-3750625)
	11-150, gnl\|Hg17\|chr1 (159282728-159282859)
	11-150, gnl\|hg17\|chr17 (42800617-42800760)
	11-150, gnl\|loxAfr1\|scaffold_10175 (976-833)
	11-150, gnl\|mm7\|chr1 (170133571-170133428)
	11-150, gnl\|Mm7\|chr1 (170133583-170133448)
	11-150, gnl\|monDom2\|scaffold_16 (12370511-12370654)
	11-150, gnl\|panTro1\|chr19 (62312621-62312478)
	11-150, gnl\|rheMac2\|chr16 (57440798-57440941)
	11-150, gnl\|rn3\|chr6 (16897099-16897242)
	11-150, gnl\|tetNig1\|chr1_random (3065698-3065555)
	11-150, gnl\|xenTro1\|scaffold_74 (1208269-1208412)