Non-Coding RNA Search

rcst17_p4.y1

Sequence:


               
               AAAAAATAGAAAAAAATGTTTTTCAATAAGGAAGGAAGGGAGAGAGGGAGGAAGGAAGAA
AAACTGGTTCTTGCATAACTGGTATGTTCTTTTTCCTTACAGCAGTTATGGGAATTGGAA
TGGGAATTCTCTACCTTCCCCATATGTGCTGTGTAGGCTCTTTTTTGCTGAGTCTGATCA
TCAGGAGGGAACTAATGATTCTGAATGCTGTCTCCTCATTCCAAGAACCTGGAGTGCCTT
GATCCTAGAAGGAGATGATTTATTAGCTCCACTGTCAAAAGAGGCCCCTGGAGGCAAACT
CCTACCCACCCCAGGATGAACACTTCTAATTTGTGGTGAGGGTCACCTATGGAGACTCAA
TCATCTTATCCTCCCTGACATCCCTCAGCTGCTTTTCATGAGACGTGGTTGCTGTAGAGA
TTATGCGACAGGGCAGTGGTGGAGCTAAGTTGGGAGGGGCTGTGGAAAGTAAATAGGAAC
GTAATTCTTACATATCTGGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAATAGAAAAAAATGTTTTTCAATAAGGAAGGAAGGGAGAGAGGGAGGAAGGAAGAA
AAACTGGTTCTTGCATAACTGGTATGTTCTTTTTCCTTACAGCAGTTATGGGAATTGGAA
TGGGAATTCTCTACCTTCCCCATATGTGCTGTGTAGGCTCTTTTTTGCTGAGTCTGATCA
TCAGGAGGGAACTAATGATTCTGAATGCTGTCTCCTCATTCCAAGAACCTGGAGTGCCTT
GATCCTAGAAGGAGATGATTTATTAGCTCCACTGTCAAAAGAGGCCCCTGGAGGCAAACT
CCTACCCACCCCAGGATGAACACTTCTAATTTGTGGTGAGGGTCACCTATGGAGACTCAA
TCATCTTATCCTCCCTGACATCCCTCAGCTGCTTTTCATGAGACGTGGTTGCTGTAGAGA
TTATGCGACAGGGCAGTGGTGGAGCTAAGTTGGGAGGGGCTGTGGAAAGTAAATAGGAAC
GTAATTCTTACATATCTGGGCT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

Help | Less info


               
               56-346, gnl|bosTau2|chr15 (7488143-7488421)
               

               
               56-346, gnl|canFam2|chr5 (25123983-25123422)
               

               
               56-346, gnl|dasNov1|scaffold_1309 (69864-70363)
               

               
               56-346, gnl|echTel1|scaffold_291044 (2436-1895)
               

               
               56-346, gnl|hg17|chr11 (110226212-110226725)
               

               
               56-346, gnl|Hg17|chr11 (110226454-110226724)
               

               
               56-346, gnl|loxAfr1|scaffold_1898 (112283-111779)
               

               
               56-346, gnl|oryCun1|scaffold_204867 (133715-133187)
               

               
               56-346, gnl|panTro1|chr9_random (2036255-2036769)
               

               
               56-346, gnl|rheMac2|chr14 (109328635-109329152)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-346, gnl|bosTau2|chr15 (7488143-7488421)
               

               
               56-346, gnl|canFam2|chr5 (25123983-25123422)
               

               
               56-346, gnl|dasNov1|scaffold_1309 (69864-70363)
               

               
               56-346, gnl|echTel1|scaffold_291044 (2436-1895)
               

               
               56-346, gnl|hg17|chr11 (110226212-110226725)
               

               
               56-346, gnl|Hg17|chr11 (110226454-110226724)
               

               
               56-346, gnl|loxAfr1|scaffold_1898 (112283-111779)
               

               
               56-346, gnl|oryCun1|scaffold_204867 (133715-133187)
               

               
               56-346, gnl|panTro1|chr9_random (2036255-2036769)
               

               
               56-346, gnl|rheMac2|chr14 (109328635-109329152)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cst (0.140036)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	56-346, gnl\|bosTau2\|chr15 (7488143-7488421)
	56-346, gnl\|canFam2\|chr5 (25123983-25123422)
	56-346, gnl\|dasNov1\|scaffold_1309 (69864-70363)
	56-346, gnl\|echTel1\|scaffold_291044 (2436-1895)
	56-346, gnl\|hg17\|chr11 (110226212-110226725)
	56-346, gnl\|Hg17\|chr11 (110226454-110226724)
	56-346, gnl\|loxAfr1\|scaffold_1898 (112283-111779)
	56-346, gnl\|oryCun1\|scaffold_204867 (133715-133187)
	56-346, gnl\|panTro1\|chr9_random (2036255-2036769)
	56-346, gnl\|rheMac2\|chr14 (109328635-109329152)