Non-Coding RNA Search

rcst20_k20.y1

Sequence:


               
               gaacccgcaacctcatggttcctagtcggattcgttaaccactgtgccatggtgggaact
ccAATGAGCCATTATTTTAAAAAGAGCCTTTTGTAAGGCATGTGGATTAGGTGCTTTCTT
CATTTCTAGTTAACACATTTGGTTGTTTCTTAAAAAAACATTGATGGACTTGAGTGGCAG
ACAATAATGTGCGTTGAATGACAGTTGAGACTTTAAACAAAGGGTAATGGTGAGTGGCTG
TGTGCCCAGTTGATGGAGTCTGTCTGGTCTCGGCTCAGTTAGTAACTTCATGAATGATCT
GTAATAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               gaacccgcaacctcatggttcctagtcggattcgttaaccactgtgccatggtgggaact
ccAATGAGCCATTATTTTAAAAAGAGCCTTTTGTAAGGCATGTGGATTAGGTGCTTTCTT
CATTTCTAGTTAACACATTTGGTTGTTTCTTAAAAAAACATTGATGGACTTGAGTGGCAG
ACAATAATGTGCGTTGAATGACAGTTGAGACTTTAAACAAAGGGTAATGGTGAGTGGCTG
TGTGCCCAGTTGATGGAGTCTGTCTGGTCTCGGCTCAGTTAGTAACTTCATGAATGATCT
GTAATAGGA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               65-309, gnl|bosTau2|chr15 (48804847-48805108)
               

               
               65-309, gnl|canFam2|chr18 (45153843-45153649)
               

               
               65-309, gnl|dasNov1|scaffold_72369 (4482-4284)
               

               
               65-309, gnl|hg17|chr11 (47516985-47517176)
               

               
               65-309, gnl|Hg17|chr11 (47517266-47517006)
               

               
               65-309, gnl|loxAfr1|scaffold_7460 (765-568)
               

               
               65-309, gnl|mm7|chr2 (90804477-90804287)
               

               
               65-309, gnl|Mm7|chr2 (90804087-90804457)
               

               
               65-309, gnl|oryCun1|scaffold_185831 (12054-12241)
               

               
               65-309, gnl|panTro1|chr9 (48039637-48039828)
               

               
               65-309, gnl|rheMac2|chr14 (24572875-24572684)
               

               
               65-309, gnl|rn3|chr3 (75944838-75944666)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-309, gnl|bosTau2|chr15 (48804847-48805108)
               

               
               65-309, gnl|canFam2|chr18 (45153843-45153649)
               

               
               65-309, gnl|dasNov1|scaffold_72369 (4482-4284)
               

               
               65-309, gnl|hg17|chr11 (47516985-47517176)
               

               
               65-309, gnl|Hg17|chr11 (47517266-47517006)
               

               
               65-309, gnl|loxAfr1|scaffold_7460 (765-568)
               

               
               65-309, gnl|mm7|chr2 (90804477-90804287)
               

               
               65-309, gnl|Mm7|chr2 (90804087-90804457)
               

               
               65-309, gnl|oryCun1|scaffold_185831 (12054-12241)
               

               
               65-309, gnl|panTro1|chr9 (48039637-48039828)
               

               
               65-309, gnl|rheMac2|chr14 (24572875-24572684)
               

               
               65-309, gnl|rn3|chr3 (75944838-75944666)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cst (0.140036)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	65-309, gnl\|bosTau2\|chr15 (48804847-48805108)
	65-309, gnl\|canFam2\|chr18 (45153843-45153649)
	65-309, gnl\|dasNov1\|scaffold_72369 (4482-4284)
	65-309, gnl\|hg17\|chr11 (47516985-47517176)
	65-309, gnl\|Hg17\|chr11 (47517266-47517006)
	65-309, gnl\|loxAfr1\|scaffold_7460 (765-568)
	65-309, gnl\|mm7\|chr2 (90804477-90804287)
	65-309, gnl\|Mm7\|chr2 (90804087-90804457)
	65-309, gnl\|oryCun1\|scaffold_185831 (12054-12241)
	65-309, gnl\|panTro1\|chr9 (48039637-48039828)
	65-309, gnl\|rheMac2\|chr14 (24572875-24572684)
	65-309, gnl\|rn3\|chr3 (75944838-75944666)