Non-Coding RNA Search

rcst21_j12.y1

Sequence:


               
               TTTTTGACACCGGCTCCTCCAACCTGTGGGTGCCCTCTGTCTACTGCAAGAGCCTGGCCT
GCACCACCCATGCCCGCTTCAACCCCAGCAAGTCCTCTACCTACTCCACCGACAGGCAGA
CCTTCTCCCTGCAGTACGGCAGTGGCAGCCTCACTGGCTTCTTCGGCTACGACACCCTAA
AGATCCAGAGCATCCAGGTCCCTGACCAGGAGTTCGGCCTGAGTGAGACAGAGCCAGGTA
CCAGTTTCCTGTATGCCCAGTTCGATGGCATCATGGGCCTGGCCTACCCCGACCTGTCTG
CGGGTGGGGCCACCACTGCCATGCAGGGCCTCCTGCAGGAGGATGCGCTCACCAGCCCAG
TCTTCAGCTTCTACCTCAGCAACCAGCAGAGCTCTCAGGACGGGGGAGAACTCGTCTTGG
GGGGTGTGGACAGCAGCCTGTACACCGGTCAGATCTACTGGGCCCCCGTCACTCAGGAGC
TATACTGGCAGATTGGCATCGAGGAGTTCCTCATTGGTGATGAGGCCTCTGGCTGGTGCT
CTGAGGGCTGCCAGGCCATTGTGGACACCGGCACGTCTCTGCTCACCGTGCCCCAGGACT
ACCTGAGTGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTGACACCGGCTCCTCCAACCTGTGGGTGCCCTCTGTCTACTGCAAGAGCCTGGCCT
GCACCACCCATGCCCGCTTCAACCCCAGCAAGTCCTCTACCTACTCCACCGACAGGCAGA
CCTTCTCCCTGCAGTACGGCAGTGGCAGCCTCACTGGCTTCTTCGGCTACGACACCCTAA
AGATCCAGAGCATCCAGGTCCCTGACCAGGAGTTCGGCCTGAGTGAGACAGAGCCAGGTA
CCAGTTTCCTGTATGCCCAGTTCGATGGCATCATGGGCCTGGCCTACCCCGACCTGTCTG
CGGGTGGGGCCACCACTGCCATGCAGGGCCTCCTGCAGGAGGATGCGCTCACCAGCCCAG
TCTTCAGCTTCTACCTCAGCAACCAGCAGAGCTCTCAGGACGGGGGAGAACTCGTCTTGG
GGGGTGTGGACAGCAGCCTGTACACCGGTCAGATCTACTGGGCCCCCGTCACTCAGGAGC
TATACTGGCAGATTGGCATCGAGGAGTTCCTCATTGGTGATGAGGCCTCTGGCTGGTGCT
CTGAGGGCTGCCAGGCCATTGTGGACACCGGCACGTCTCTGCTCACCGTGCCCCAGGACT
ACCTGAGTGACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|18203304|sp|Q9N2D3|PEPC_CALJA

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|18203304|sp|Q9N2D3|PEPC_CALJA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               175-381, gnl|bosTau2|chr23 (15275047-15274841)
               

               
               175-381, gnl|Hg17|chr6 (41818213-41818007)
               

               
               175-381, gnl|Mm7|chr17 (45867134-45867337)
               


               
               506-612, gnl|bosTau2|chr23 (15272605-15272499)
               

               
               506-612, gnl|Hg17|chr6 (41815662-41815556)
               

               
               506-612, gnl|Mm7|chr17 (45869501-45869610)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-381, gnl|bosTau2|chr23 (15275047-15274841)
               

               
               175-381, gnl|Hg17|chr6 (41818213-41818007)
               

               
               175-381, gnl|Mm7|chr17 (45867134-45867337)
               


               
               506-612, gnl|bosTau2|chr23 (15272605-15272499)
               

               
               506-612, gnl|Hg17|chr6 (41815662-41815556)
               

               
               506-612, gnl|Mm7|chr17 (45869501-45869610)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cst (0.140036)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	175-381, gnl\|bosTau2\|chr23 (15275047-15274841)
	175-381, gnl\|Hg17\|chr6 (41818213-41818007)
	175-381, gnl\|Mm7\|chr17 (45867134-45867337)

	506-612, gnl\|bosTau2\|chr23 (15272605-15272499)
	506-612, gnl\|Hg17\|chr6 (41815662-41815556)
	506-612, gnl\|Mm7\|chr17 (45869501-45869610)